PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00269.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | G2-like | ||||||||
Protein Properties | Length: 254aa MW: 28686.2 Da PI: 8.8641 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.4 | 1.1e-30 | 122 | 176 | 2 | 56 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +r+rW+++LH+rF++a++++GGs++AtPk+i+++m+v+gLt+++vkSHLQkYR++ Rsa1.0_00269.1_g00004.1 122 QRRRWSEDLHRRFIDALHRIGGSQVATPKQIRDVMNVDGLTNDEVKSHLQKYRMH 176 8****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.823 | 118 | 178 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.86E-17 | 118 | 179 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-27 | 118 | 179 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.8E-25 | 122 | 176 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.6E-7 | 123 | 174 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MVSLCVAIEK LKEEASSSSV MMSSKLDTDN KKNWMSSAQL WISNSTNSQL PSTNEEEDRC 60 VSQPPFQTCN KPNQGGAFMS FNRSLPPPPP PAAPLSLMTP TSEILTDYNR TEQSHHIQKK 120 EQRRRWSEDL HRRFIDALHR IGGSQVATPK QIRDVMNVDG LTNDEVKSHL QKYRMHIRKH 180 PLHVAKTLSA SDQRGLLISL SRSDSPQGPL LVDRGLFSNN GGGHSSEEEE KSDGRSSWKS 240 ESRWKRQTLL DLEL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00629 | PBM | Transfer from PK14402.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00269.1_g00004.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018480433.1 | 1e-155 | PREDICTED: myb family transcription factor EFM-like | ||||
Swissprot | F4JRB0 | 1e-104 | HHO5_ARATH; Transcription factor HHO5 | ||||
TrEMBL | V4MKZ9 | 1e-106 | V4MKZ9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006411945.1 | 1e-107 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4922 | 26 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.2 | 3e-94 | G2-like family protein |
Publications ? help Back to Top | |||
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