PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK14402.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

G2-like

Protein Properties

Length: 408aa MW: 45390.4 Da PI: 6.7613

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK14402.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.1	7e-32	272	327	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+ eLH+rFv+a++qLGGs++AtPk+i+elm v+gLt+++vkSHLQkYRl+ PK14402.1 272 KQRRCWSIELHRRFVDAIHQLGGSHVATPKQIRELMRVEGLTNDEVKSHLQKYRLH 327 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.423	269	329	IPR017930	Myb domain
SuperFamily	SSF46689	1.02E-16	270	330	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.6E-28	271	330	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-25	272	327	IPR006447	Myb domain, plants
Pfam	PF00249	7.7E-7	274	325	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MELSLNNNSG LAFVPKTISE FLEHVSKIRD GSEKLSKLDD YVKRFEEEKR KIDAFKRELP 60 LCMSLVTDAI ERLKEEEKAI KAMDEFTSFK GNSDENGSTN LVDDSCDKKS WMSSAQLWST 120 NVVDCDSHNK QTSVSELKPR IEEVAVDRHV SEKQPIGVSD YRNRGGAFVP FKAQPSPPSG 180 VIVRTSLKED KEVSLSRVPS LSLMPPTPLP TTSPISEMGG TSGDSNPKSS HSCKTGSASS 240 FLTEQVKLVS KSQLVQHQTQ HQHHQQQQPF RKQRRCWSIE LHRRFVDAIH QLGGSHVATP 300 KQIRELMRVE GLTNDEVKSH LQKYRLHVRK LPNSSTEPDS GLWMSQDQCG DSSHQSASPQ 360 GPLAPSGSNK ALSHTGGNST EVEDEEEDEK SDGHSWRGGN HNKAGEDV

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MELSLNNNSG LAFVPKTISE FLEHVSKIRD GSEKLSKLDD YVKRFEEEKR KIDAFKRELP  60
LCMSLVTDAI ERLKEEEKAI KAMDEFTSFK GNSDENGSTN LVDDSCDKKS WMSSAQLWST  120
NVVDCDSHNK QTSVSELKPR IEEVAVDRHV SEKQPIGVSD YRNRGGAFVP FKAQPSPPSG  180
VIVRTSLKED KEVSLSRVPS LSLMPPTPLP TTSPISEMGG TSGDSNPKSS HSCKTGSASS  240
FLTEQVKLVS KSQLVQHQTQ HQHHQQQQPF RKQRRCWSIE LHRRFVDAIH QLGGSHVATP  300
KQIRELMRVE GLTNDEVKSH LQKYRLHVRK LPNSSTEPDS GLWMSQDQCG DSSHQSASPQ  360
GPLAPSGSNK ALSHTGGNST EVEDEEEDEK SDGHSWRGGN HNKAGEDV

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00629	PBM	25215497	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015890038.1	1e-134	transcription factor HHO5-like
TrEMBL	A0A2P5ADI9	0.0	A0A2P5ADI9_PARAD; GARP transcription factor
STRING	XP_010109894.1	1e-128	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1208	34	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49560.1	4e-33	G2-like family protein