PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00254.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 219aa MW: 25539.5 Da PI: 6.8134 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.5 | 6.4e-20 | 60 | 113 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le F ++++ e++ +LAk+lgL+ rqV vWFqNrRa++k+ Rsa1.0_00254.1_g00001.1 60 KRKLSEEQVRMLEMSFGDEHKLESERKDRLAKELGLDPRQVAVWFQNRRARWKN 113 45899***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 122.1 | 2.8e-39 | 59 | 150 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 +kr+ls+eqv++LE+sF e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE +y++Lk+a+++++ e++rL++ev +L Rsa1.0_00254.1_g00001.1 59 RKRKLSEEQVRMLEMSFGDEHKLESERKDRLAKELGLDPRQVAVWFQNRRARWKNKRLEDEYTRLKNAHENVVVEKHRLDSEVLHL 144 8************************************************************************************* PP HD-ZIP_I/II 88 reelke 93 +e+l++ Rsa1.0_00254.1_g00001.1 145 KEQLHD 150 ***986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.957 | 54 | 114 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-18 | 57 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.7E-19 | 57 | 118 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.78E-17 | 59 | 115 | No hit | No description |
Pfam | PF00046 | 3.5E-17 | 60 | 113 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-20 | 61 | 120 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-5 | 85 | 94 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 89 | 112 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 94 | 110 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MNNQNVDDHN LLFISQMYPN VYTSSIPQQG ESKPARPRRR RKSKSVAVVG GEGSNGWFRK 60 RKLSEEQVRM LEMSFGDEHK LESERKDRLA KELGLDPRQV AVWFQNRRAR WKNKRLEDEY 120 TRLKNAHENV VVEKHRLDSE VLHLKEQLHD AEREIQRLAQ RVEGAISNSP ISSVSVVANQ 180 TTPFFGDYEV EVGDDSDGYQ NLFYSPEYID GFEWISPFV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 38 | 43 | RRRKSK |
2 | 39 | 61 | RRKSKSVAVVGGEGSNGWFRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00254.1_g00001.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018455201.1 | 1e-162 | PREDICTED: homeobox-leucine zipper protein ATHB-21 isoform X2 | ||||
Swissprot | Q9ZU70 | 1e-116 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | A0A3P6DCZ7 | 1e-131 | A0A3P6DCZ7_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g025880.1 | 1e-128 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2208 | 26 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18550.1 | 1e-98 | homeobox protein 21 |
Publications ? help Back to Top | |||
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