PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00250.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 439aa    MW: 47913 Da    PI: 8.9091
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00250.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.3e-07117137526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               C+f+ + G Ck Gd+C+F H+
  Rsa1.0_00250.1_g00012.1 117 VCKFWKA-GNCKKGDQCSFLHS 137
                              5******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.2E-6110137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873111139IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6112138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-7112137IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-4117137IPR000571Zinc finger, CCCH-type
SMARTSM003201.9E-4143182IPR001680WD40 repeat
SuperFamilySSF509782.56E-43144191IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.109.9E-43145433IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5029419.776150354IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.984150191IPR001680WD40 repeat
PfamPF117156.9E-6165198No hitNo description
PROSITE patternPS006780169183IPR019775WD40 repeat, conserved site
PRINTSPR003202.1E-8169183IPR020472G-protein beta WD-40 repeat
SMARTSM0032094220259IPR001680WD40 repeat
SuperFamilySSF509782.56E-43229434IPR017986WD40-repeat-containing domain
SMARTSM003207.8E-4267305IPR001680WD40 repeat
PfamPF004004.5E-5271305IPR001680WD40 repeat
PROSITE profilePS5008210.542289314IPR001680WD40 repeat
PROSITE patternPS006780292306IPR019775WD40 repeat, conserved site
PRINTSPR003202.1E-8292306IPR020472G-protein beta WD-40 repeat
SMARTSM003205.9E-6308345IPR001680WD40 repeat
PfamPF004009.2E-4310345IPR001680WD40 repeat
PROSITE profilePS5008210.275315354IPR001680WD40 repeat
PRINTSPR003202.1E-8332346IPR020472G-protein beta WD-40 repeat
SMARTSM00320100351392IPR001680WD40 repeat
SMARTSM0032023395432IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MCVYSMSYKA PRRYYERRNF GVERRQDFAA DVVPRRPYEN KGPNKSRNLV WTASDANTAR  60
KNGSTYGSTK PQVPGAASSV SNLQRKVAAY GQRSSSVSDT RGWGSNDRGS PKRKECVCKF  120
WKAGNCKKGD QCSFLHSWTS LPGMVMVAAL EGHKKDLKGI ALPQGSDKLF SASSDGTLRI  180
WDCHTGQCVH TINLQAEAGS LMSEGPWVFL GLPNAVKAFN VQTSKDLHLN GVVGQVRAMT  240
AGNGMLFAGT SSGSISVWKA TETESDPFTY LTSLEGHHSG EVTCFIVGGQ RLYSGSVDRT  300
IKVWDLNTLE CTMTLRQHTD TVTSLLCWDQ YLISSSLDGT IKVWSSSEND SLKVTHTRRQ  360
EQSVHTLCGM SDADGKPIVF CSYENGTVSI CDLPSFEERG KMFSTNTVGA ITVGPEGLLF  420
NGDKSGKLRV WSLAGTKAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B9e-18135397113393F-box/WD repeat protein 7
2ovq_B9e-18135397113393F-box/WD repeat protein 7
2ovr_B9e-18135397113393F-box/WD repeat protein 7
6g6m_A5e-1815043311323Tako8
6g6n_A5e-1815043311323Tako8
6g6n_B5e-1815043311323Tako8
6g6n_C5e-1815043311323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00250.1_g00012.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485361.10.0PREDICTED: zinc finger CCCH domain-containing protein 59-like isoform X1
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A3P6CWH40.0A0A3P6CWH4_BRAOL; Uncharacterized protein
STRINGBo4g140040.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein