PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00234.1_g00026.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 346aa MW: 39932 Da PI: 6.6123 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.8 | 2.4e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+d+++++G g+W+t ++ g+ R++k+c++rw +yl Rsa1.0_00234.1_g00026.1 14 KGPWTSEEDQKLLDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.7e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ Rsa1.0_00234.1_g00026.1 67 RGRFSFEEEEAIIQLHSFLGNK-WSAIAARLP-GRTDNEIKNFWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.538 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.43E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.17E-12 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.9E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.542 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 6.5E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.7E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.03E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MGRSPCCEKN GLKKGPWTSE EDQKLLDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEEAIIQ LHSFLGNKWS AIAARLPGRT DNEIKNFWNT HIRKKLLRMG 120 IDPTTHNPRL DLLDISSILA SSLYNSSSHH VNMSRVMMDA HHPQQHNPLV NPEILKFANS 180 LFSQDQDHNH NHNHNQNRNQ NFLVNHDSKT HENYTVNHDD NQTGVNQYQT NHHEIQYCLP 240 PFPDEAHFND TDHNGEHMFA SNSNMSVQDC NTASSSFVFD HSYLDHNFNI AYSVMNTPSS 300 NPTLNSSVTT YINSSSCSTE DEMESYCSNL MKFDISDFLD VNDFII |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-30 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00234.1_g00026.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY087252 | 1e-175 | AY087252.1 Arabidopsis thaliana clone 33333 mRNA, complete sequence. | |||
GenBank | AY519607 | 1e-175 | AY519607.1 Arabidopsis thaliana MYB transcription factor (At4g21440) mRNA, complete cds. | |||
GenBank | BT001235 | 1e-175 | BT001235.1 Arabidopsis thaliana myb-related protein M4 (At4g21440) mRNA, complete cds. | |||
GenBank | X90382 | 1e-175 | X90382.2 Arabidopsis thaliana mRNA for putative transcription factor (MYB102 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018449699.1 | 0.0 | PREDICTED: transcription factor MYB122-like | ||||
Swissprot | Q9LDR8 | 1e-171 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A078ICP0 | 0.0 | A0A078ICP0_BRANA; BnaC03g64160D protein | ||||
STRING | Bo3g162580.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 1e-152 | MYB-like 102 |
Publications ? help Back to Top | |||
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