PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00229.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 157aa MW: 18507.1 Da PI: 6.5071 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 40 | 1.2e-12 | 9 | 134 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleev.ikev..diykvePwdLpk..kvka..eekewyfFskrdkkyatgkrknratksgyWkatgk 88 +de++v yL++kv+g + + ++++ d+yk ePw Lp+ + +ew + krd ky + ++ + +g W Rsa1.0_00229.1_g00005.1 9 SDEDIVEGYLRPKVNGAATANPRYiVDNMeeDVYKREPWLLPQptD--PilNPNEWLYLGKRDWKYLS---AEGVDCEGSWMPVEG 89 7***************9955544424443449*********96332..233778************75...4555668****8888 PP NAM 89 dkevlsk.kgelvglkktLvfy....kgrapkgektdWvmheyrl 128 +++s+ +gel+g + + + ++ ++W+m eyrl Rsa1.0_00229.1_g00005.1 90 RSRIMSEdSGELIGGSMRFRYCfrnkNDKSTPMDWSNWFMREYRL 134 888888757777887777777654422233334589*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.179 | 1 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-7 | 4 | 134 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.27E-21 | 9 | 152 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MAEVRCRISD EDIVEGYLRP KVNGAATANP RYIVDNMEED VYKREPWLLP QPTDPILNPN 60 EWLYLGKRDW KYLSAEGVDC EGSWMPVEGR SRIMSEDSGE LIGGSMRFRY CFRNKNDKST 120 PMDWSNWFMR EYRLCDKFGN PIKTRHVLCK ITCYPHL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00229.1_g00005.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018459009.1 | 1e-108 | PREDICTED: NAC transcription factor 29 | ||||
Refseq | XP_018459010.1 | 1e-108 | PREDICTED: NAC transcription factor 29 | ||||
TrEMBL | A0A397ZK76 | 1e-104 | A0A397ZK76_BRACM; Uncharacterized protein | ||||
STRING | XP_006292493.1 | 3e-81 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15427 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64105.1 | 5e-58 | NAC domain containing protein 27 |