PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00225.1_g00014.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 387aa    MW: 40773.8 Da    PI: 7.762
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00225.1_g00014.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.41.4e-0995118125
                              --S---SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                              +kt+lC+ f++ GtC+y  +C+FaH
  Rsa1.0_00225.1_g00014.1  95 FKTKLCCKFRA-GTCPYVTNCNFAH 118
                              69*********.************* PP
2zf-CCCH42.61e-13261286126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              +kt++C+ +  tG+C++G++C+FaHg
  Rsa1.0_00225.1_g00014.1 261 WKTRICNKWEITGYCPFGAKCHFAHG 286
                              8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.14E-792125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-1392127IPR000571Zinc finger, CCCH-type
SMARTSM003560.003994120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.67194121IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-795118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-7182209IPR000571Zinc finger, CCCH-type
SMARTSM003560.47182209IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.244182210IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-8183209IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-17256290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.29E-9257291IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-9260287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178260288IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-11261286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSHRRESSGD VVHVIPTNNP PPENWFPNLG DTSVWATEDD YNRGWAVNPD NSSSGGDNGP  60
PNKKTRGSPS SSSSSAAAAA AAASNRTKAI GKMFFKTKLC CKFRAGTCPY VTNCNFAHTV  120
EELRRPPPNW QEIVAAAHEE ERSGSGTPTP TTTTTTTTAV EPREEYQIPS LVSSTAEEGG  180
RSFKGRHCKK FYTEEGCPYG ESCTFLHDEA SRNRESVAIS LGPGGYGGGG GAGGNSNVVV  240
LGGGGGGGGG SGIDILKPSN WKTRICNKWE ITGYCPFGAK CHFAHGAAEL HRFGGGLVEG  300
EGKDGGVSSN PDIKQTGPNP KGHSDTTTTL LSPGVVSHHA DASYHSGVAL QRASSAVTQK  360
PGIRTHQKWK GPAKISRIYG DWIDDVE
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00225.1_g00014.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892551e-128AC189255.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436497.10.0PREDICTED: zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM30.0C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A397Y5P70.0A0A397Y5P7_BRACM; Uncharacterized protein
STRINGBo5g048980.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.10.0C3H family protein