PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00223.1_g00014.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 287aa    MW: 31073.4 Da    PI: 5.6035
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00223.1_g00014.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.14.6e-341569155
                  G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                             k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Rsa1.0_00223.1_g00014.1 15 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 69
                             79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3031272IPR017930Myb domain
SuperFamilySSF466896.27E-181469IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-321470IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-251570IPR006447Myb domain, plants
PfamPF002491.1E-91768IPR001005SANT/Myb domain
PfamPF143792.1E-23102147IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEADDGGNNS GHASKQRLRW THELHERFVD AVAQLGGPDR ATPKGVLRVM GVQGLTIYHV  60
KSHLQKYRLA KYLPDSSSEG KKTDKKESGD VLSGLDGSPG TQITEALKLQ MEVQKRLHEQ  120
LEVQRQLQLR IEAQGKYLKK IIEEQQRLSG ELGESSAPVT GESDPATPAP TSEFPLQGKS  180
GKECEPDKSL SVEESHSSYR EALTPDSGCN IGSQDESAGE ERSSKKPRLM RGGAAGYTSE  240
MVVAHPILES GLNSSYHQSD HALAFDVPST SLLGAQNGLD NVSGDDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-231572158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-231572158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-231572158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-231572158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00223.1_g00014.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5944060.0KF594406.1 Suaeda glauca MYB transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439269.10.0PREDICTED: myb family transcription factor PHL7-like
SwissprotQ9SJW00.0PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A397Z5S70.0A0A397Z5S7_BRACM; Uncharacterized protein
TrEMBLM4E8030.0M4E803_BRARP; Uncharacterized protein
STRINGBra024909.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87532536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-168G2-like family protein