PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00222.1_g00019.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 549aa    MW: 62751.5 Da    PI: 4.6291
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00222.1_g00019.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM70.25.4e-22932212128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyat.gkrknr.atksgy 82 
                              ppG rF Ptd   v  +L++kv++kk     +i+++d+yk +Pw L+ +v++    + ewy+F++r+k+ a+  +r+ r     g+
  Rsa1.0_00222.1_g00019.1  93 PPGSRFLPTDLGCVRVHLRNKVDKKKSG---FITTLDVYKDDPWLLD-HVENdlfPRGEWYYFTPRNKRGASsCSRTVRgRGGGGT 174
                              9************************955...5**************8.3333233445********999875367888977779** PP

                      NAM  83 WkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                              Wk+   ++++++k++++ g  ++Lv+ k   + + + t W+m+ey l
  Rsa1.0_00222.1_g00019.1 175 WKTISVKEAIKDKDKKVEGYIQSLVYNKTnVNGEIKPTGWTMKEYCL 221
                              **************************96524556678********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-2786234IPR003441NAC domain
PROSITE profilePS5100529.80592237IPR003441NAC domain
PfamPF023651.2E-1393221IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MTRDNDKPKV DDESSSKSGD SLLGRGDQEG IGSVSSTRGS KYFEEGSSSS SSHNHMNNLE  60
EHQRLMMLRI NQGMRHLQHT DDPNSTKKAP VYPPGSRFLP TDLGCVRVHL RNKVDKKKSG  120
FITTLDVYKD DPWLLDHVEN DLFPRGEWYY FTPRNKRGAS SCSRTVRGRG GGGTWKTISV  180
KEAIKDKDKK VEGYIQSLVY NKTNVNGEIK PTGWTMKEYC LHEKNEDDLV LCHLKGDLKK  240
KGFAEEVKKD NILSNQVQDH EQEEAGANRV EMRTLQEDHG DATQQQQQQQ QQQEQDAPVR  300
RSLEGQGLGL ETMMTTHNNL MTMVHEEDHG DATQEQQQQQ EQGAAALGLP SHEGEDIWSE  360
TNNLMTMQHD EDHGDDITEL EQQRLDQDYP LPDMPHYEGQ YSGFETMRQM QNDFRTMLQI  420
NHGDSSTQQQ QEQDAMALDI TPLHENHELG FETMTTTHNN LTTVQHEEDH GDATQKQQQQ  480
EQDAPVPALH HTHEGQDLWF ETMMPTLDED RQNDFDGSDF FIDVDEVIKD NANEAHLQQP  540
DVSQARDMQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00222.1_g00019.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022556272.11e-131NAC domain-containing protein 6-like
TrEMBLA0A3P5YQR21e-139A0A3P5YQR2_BRACM; Uncharacterized protein
STRINGBra004575.1-P1e-138(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14026919
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.12e-26NAC domain containing protein 6