PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00222.1_g00015.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 264aa MW: 30031.8 Da PI: 9.0545

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00222.1_g00015.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	75.2	1.6e-23	92	220	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyat.gkrknr.atksgy 82 ppG rF Ptd v +L++kv++kk +i+++d+yk +Pw L+ +v++ + ewy+F++r+k+ a+ +r+ r g+ Rsa1.0_00222.1_g00015.1 92 PPGSRFLPTDLGCVRVHLRNKVDKKKSG---FITTMDVYKDDPWLLD-HVENdlfPRGEWYYFTPRNKRGASsCSRTVRgRGGGGT 173 9**********************955...5**********8.3333233445****999875367888977779 PP NAM 83 WkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 Wk+t ++++++k++++ g ++Lv+ k + + + t W m+ey l Rsa1.0_00222.1_g00015.1 174 WKTTSVKEAIKDKNEKVEGYIQSLVYNKTnVNGEIKPTGWSMKEYCL 220 ************************96524556678******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-28	85	233	IPR003441	NAC domain
PROSITE profile	PS51005	30.273	91	236	IPR003441	NAC domain
Pfam	PF02365	1.9E-14	92	220	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MTRDNDKPKV DDESSSKSDD SLLGRGDQEG IGSVSLTRGS KYFEEGSSSS SHNHMNNLEE 60 HQRVMMLRIN QGMRHLQHTD DPNSTKKAPV YPPGSRFLPT DLGCVRVHLR NKVDKKKSGF 120 ITTMDVYKDD PWLLDHVEND LFPRGEWYYF TPRNKRGASS CSRTVRGRGG GGTWKTTSVK 180 EAIKDKNEKV EGYIQSLVYN KTNVNGEIKP TGWSMKEYCL HEKNEDDLVL CHLKGDLKKK 240 GFVEEVKKDN ILPNHLGFVF LVKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-13	92	233	18	162	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-13	92	233	18	162	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-13	92	233	18	162	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-13	92	233	18	162	NO APICAL MERISTEM PROTEIN
3swm_A	4e-13	92	233	21	165	NAC domain-containing protein 19
3swm_B	4e-13	92	233	21	165	NAC domain-containing protein 19
3swm_C	4e-13	92	233	21	165	NAC domain-containing protein 19
3swm_D	4e-13	92	233	21	165	NAC domain-containing protein 19
3swp_A	4e-13	92	233	21	165	NAC domain-containing protein 19
3swp_B	4e-13	92	233	21	165	NAC domain-containing protein 19
3swp_C	4e-13	92	233	21	165	NAC domain-containing protein 19
3swp_D	4e-13	92	233	21	165	NAC domain-containing protein 19
4dul_A	3e-13	92	233	18	162	NAC domain-containing protein 19
4dul_B	3e-13	92	233	18	162	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00222.1_g00015.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022556272.1	1e-107	NAC domain-containing protein 6-like
TrEMBL	M4CK45	1e-111	M4CK45_BRARP; Uncharacterized protein
STRING	Bra004579.1-P	1e-111	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14026	9	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03490.1	1e-25	NAC domain containing protein 6