PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00205.1_g00042.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 280aa    MW: 32270.2 Da    PI: 5.4162
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00205.1_g00042.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM25.73.2e-081814311128
                      NAM  11 deelvveyLkkkvegkkleleevikev..diykvePwdLpk.kvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                              d+ ++  +L++k+eg+ + +   i e+  ++y+ ePw Lp+ ++++   + +ew +  k ++++      + + ++g W   g+  
  Rsa1.0_00205.1_g00042.1  18 DSGIIEGFLRPKIEGEAVAIPGLIVELgeELYTREPWLLPHpQTAHpilNPREWLYLGKPHRNNF---PVEGVDHEGCWVRIGSAV 100
                              88899************9998889998778*********95322224456779988888777553...45667789********99 PP

                      NAM  91 evlsk.kgelvglkktLvfy...kgrapkg.ektdWvmheyrl 128
                               + s+ ++e +g    + +    kg+++ + + ++W+m+eyrl
  Rsa1.0_00205.1_g00042.1 101 LIRSEeTDEIIGGTSRFRYRfrnKGDEHAPlRWSNWFMKEYRL 143
                              999985566688888888876664433333168********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.1598168IPR003441NAC domain
SuperFamilySSF1019411.83E-1317148IPR003441NAC domain
SuperFamilySSF545939.93E-11150276IPR029068Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Gene3DG3DSA:3.10.180.102.7E-20150276IPR029068Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
PfamPF009031.5E-8151276IPR004360Glyoxalase/fosfomycin resistance/dioxygenase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MTTTRMAGFG EEESGISDSG IIEGFLRPKI EGEAVAIPGL IVELGEELYT REPWLLPHPQ  60
TAHPILNPRE WLYLGKPHRN NFPVEGVDHE GCWVRIGSAV LIRSEETDEI IGGTSRFRYR  120
FRNKGDEHAP LRWSNWFMKE YRLFNPTPHM FRVKDPKASL DFYTFYDTST DPTERTVWTF  180
GRPATIELTH NWDTESDPEF KGGNSEPREF GKVSTLLFST FTSNWSRLSG HIVYHQYEPV  240
DDVHKACERF EQLGVELAGK MKNIALIKDP DGYWIESSLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2za0_A2e-2515027636173Glyoxalase I
2za0_B2e-2515027636173Glyoxalase I
4kyh_A2e-2515027636173Lactoylglutathione lyase
4kyh_B2e-2515027636173Lactoylglutathione lyase
4kyk_A2e-2515027636173Lactoylglutathione lyase
4kyk_B2e-2515027636173Lactoylglutathione lyase
4opn_A2e-2515027636173Lactoylglutathione lyase
4opn_B2e-2515027636173Lactoylglutathione lyase
4x2a_A2e-2515027636173Lactoylglutathione lyase
4x2a_B2e-2515027636173Lactoylglutathione lyase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00205.1_g00042.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT7204969e-31KT720496.1 Brassica napus cultivar 2682 glyoxalase I (GLYI) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447376.11e-129PREDICTED: lactoylglutathione lyase-like
TrEMBLM4EA933e-90M4EA93_BRARP; Uncharacterized protein
STRINGBra025701.1-P5e-91(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM154271117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64105.12e-46NAC domain containing protein 27