PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00201.1_g00021.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 301aa    MW: 33146.1 Da    PI: 5.531
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00201.1_g00021.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-17108157255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdps+    +r+++g+f taeeAa  +++a+ +++g
  Rsa1.0_00201.1_g00021.1 108 KYRGVRQRP-WGKYAAEIRDPSK---GARIWIGTFNTAEEAAIGYDKAAIRIKG 157
                              8********.**********965...4***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.23E-19108164IPR016177DNA-binding domain
CDDcd000187.04E-29108163No hitNo description
Gene3DG3DSA:3.30.730.108.3E-27108163IPR001471AP2/ERF domain
PROSITE profilePS5103220.85108165IPR001471AP2/ERF domain
PfamPF008476.3E-11108157IPR001471AP2/ERF domain
SMARTSM003801.4E-32108171IPR001471AP2/ERF domain
PRINTSPR003676.5E-10109120IPR001471AP2/ERF domain
PRINTSPR003676.5E-10131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MKSRERNVKY TVHRKLTSLT DQPFNGCPKV VKITVTDPCA TDSSSDEEEN DRVVSRAAAT  60
RKRVKRYVDV IRFCDNKQGG AAAAKRKKPA AAENGGGGDD HGSVKPVKYR GVRQRPWGKY  120
AAEIRDPSKG ARIWIGTFNT AEEAAIGYDK AAIRIKGCNA LTNILTPPPP STPPTAIDLE  180
TVSPARESSQ YSMRSPTSVL RFSRDEETTE LRTVSASPVV VVEEETPAGF SLPDPFFLPP  240
ELFPARDSFW DSEITPDPLF LDETVSTRDS NLSDGFPLGV IGDLSSCSWD VDEFFKDHLF  300
D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22104164162ATERF1
3gcc_A2e-22104164162ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00201.1_g00021.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438034.10.0PREDICTED: ethylene-responsive transcription factor CRF5-like
RefseqXP_018438223.10.0PREDICTED: ethylene-responsive transcription factor CRF5-like
SwissprotO823391e-102CRF5_ARATH; Ethylene-responsive transcription factor CRF5
TrEMBLA0A078HU651e-131A0A078HU65_BRANA; BnaC04g01080D protein
TrEMBLA0A0D3BNV11e-131A0A0D3BNV1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C3E41e-131A0A3P6C3E4_BRAOL; Uncharacterized protein
STRINGBo4g009400.11e-132(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.13e-91cytokinin response factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Striberny B, et al.
    Cytokinin Response Factor 5 has transcriptional activity governed by its C-terminal domain.
    Plant Signal Behav, 2017. 12(2): p. e1276684
    [PMID:28045578]