PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00191.1_g00023.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 511aa    MW: 57414.4 Da    PI: 6.4263
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00191.1_g00023.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.62.5e-27281334256
                  G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                              ++++Wt+eLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQk+R++
  Rsa1.0_00191.1_g00023.1 281 KKVDWTQELHKKFVQAVEQL-GVDQAIPSRILELMKVDGLTRHNVASHLQKFRMH 334
                              689*****************.********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.52E-517132IPR011006CheY-like superfamily
PROSITE profilePS5011012.17520132IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23008.5E-729134No hitNo description
PROSITE profilePS5129417.615277336IPR017930Myb domain
SuperFamilySSF466891.88E-18278337IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-26279336IPR009057Homeodomain-like
TIGRFAMsTIGR015579.1E-25281334IPR006447Myb domain, plants
PfamPF002491.4E-7283331IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MVFTSNDISN WENFPKGLRV LLLDCGDGIS AAETRSKLES MDYIVTTFSD ETEALSAVIK  60
SPDSFHIAIV EVNTSDENES FKFLEAAKDH LPTISFDFKR SLHYNYDEMH SVEFLQKPLS  120
PEKLKNIWQH VVHKAFNDGG TDVSESLKPV KESVVSMLHL DTDMMSTDEK DPAPSTPQLK  180
QVSRLLDGCD RRENINSSTE KEDIEDQDIG ESKSVDTTNH DDNVIVKEEK EDGEKKEGQT  240
GDTKSEKTDS VKFQKKEDET TKHNNKSTGI KNLSGNKPSR KKVDWTQELH KKFVQAVEQL  300
GVDQAIPSRI LELMKVDGLT RHNVASHLQK FRMHRRNLLP KEDHNRRWIQ SRENQRQIHR  360
QYNGFQQQHR PVMAYPVWGL PGVHPPGAVP PLWPPPLQSS GQLPPWHWRP PYPTVNGNAW  420
GCPVVQPVTG TFSSPVTGAF STPSAIQLDE EMVDQVVKEA ISKPWLPLPL GLKPPSAESV  480
LAELSRQGIS AVPSSSSSSS SCPINGSRRL R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16282333758ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00191.1_g00023.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018471641.10.0PREDICTED: two-component response regulator-like APRR2
SwissprotQ6LA430.0APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A398AK010.0A0A398AK01_BRACM; Uncharacterized protein
STRINGBra013277.1-P0.0(Brassica rapa)
STRINGBra013278.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.60.0ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]