PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00189.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WOX
Protein Properties Length: 309aa    MW: 34616.8 Da    PI: 6.0499
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00189.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.21.2e-173999257
                             T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                             ++R+++++eq+++Le+ F++   +p +ee++++  +l    ++ +++V++WFqNr+ + k+
  Rsa1.0_00189.1_g00005.1 39 KPRWNPKPEQIRILESIFNSgIVNPPREEIQRIRIRLqeygQIGDANVFYWFQNRKSRAKH 99
                             89*****************99*************************************995 PP
2Wus_type_Homeobox110.87.3e-3638100264
        Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                              +++RW+P+peQi+iLe++++sG+++P++eeiqri+ +L+eyG+i+d+NVfyWFQNrk+R ++k
  Rsa1.0_00189.1_g00005.1  38 PKPRWNPKPEQIRILESIFNSGIVNPPREEIQRIRIRLQEYGQIGDANVFYWFQNRKSRAKHK 100
                              579**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.17135100IPR001356Homeobox domain
SuperFamilySSF466891.1E-1136102IPR009057Homeodomain-like
SMARTSM003891.1E-637104IPR001356Homeobox domain
CDDcd000861.34E-738100No hitNo description
PfamPF000462.7E-153999IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-63999IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0030010Biological Processestablishment of cell polarity
GO:0048825Biological Processcotyledon development
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSSSNKNWPS MFKSKPLNNQ HHHRDMDTSF SSDRVPDPKP RWNPKPEQIR ILESIFNSGI  60
VNPPREEIQR IRIRLQEYGQ IGDANVFYWF QNRKSRAKHK LRVLKKNPKM LGCNPNKTRK  120
DKIITPSPSG DTTDPCFGLV NHETGLFPSQ NNELVITEPA SFLYPDDNNP SFGQSGFGFG  180
DFVVRPVVSE ERFEFAAANN GVNMNIPEIN FEGGENGSFP SSVSATVPST VNQSQVLFGG  240
GDVGDYLSPE RLTVFINDMP FEIEGGSFNV REAFGSNAML INSFGQPILT DEFGVTFQPL  300
QNGAIYYLL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor, which may be involved in embryonic patterning (PubMed:14711878). May be required for basal embryo development after fertilization (PubMed:14711878). Acts partially redundantly with STIP in promoting embryonic cell division and proliferation (PubMed:17706632). Promotes cotyledon boundary formation by maintaining the symmetry in CUC genes expression domains (PubMed:22827849). {ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:22827849, ECO:0000303|PubMed:14711878}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00189.1_g00005.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2 (PubMed:21316593). Up-regulated by CLE8 (PubMed:22427333). {ECO:0000269|PubMed:21316593, ECO:0000269|PubMed:22427333}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619706.10.0PREDICTED: WUSCHEL-related homeobox 8 isoform X1
SwissprotQ6X7J51e-142WOX8_ARATH; WUSCHEL-related homeobox 8
TrEMBLA0A3P6DD030.0A0A3P6DD03_BRAOL; Uncharacterized protein
STRINGBo2g127670.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142621619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45980.11e-119WUSCHEL related homeobox 8
Publications ? help Back to Top
  1. Xiao W, et al.
    DNA methylation is critical for Arabidopsis embryogenesis and seed viability.
    Plant Cell, 2006. 18(4): p. 805-14
    [PMID:16531498]
  2. Wang W, et al.
    Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice.
    PLoS Genet., 2014. 10(3): p. e1004154
    [PMID:24625559]
  3. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    Wuschel-related homeobox 8/9 is important for proper embryo patterning in the gymnosperm Norway spruce.
    J. Exp. Bot., 2014. 65(22): p. 6543-52
    [PMID:25205582]
  4. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]