PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00180.1_g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HSF | ||||||||
Protein Properties | Length: 407aa MW: 45875.5 Da PI: 4.6998 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 107.3 | 1.2e-33 | 52 | 143 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 Fl+k++++++d++l+ +isw +g sfvv+d+ efa+ +Lp+ Fkh+nf+SFvRQLn+YgF+k+++++ weF+++ F Rsa1.0_00180.1_g00020.1 52 FLSKTFDLVDDPSLDPVISWGLTGASFVVWDPVEFARIILPRNFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFANEAFL 128 9****************************************************************999.........********* PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrkks 102 +g+k+ll++i+r++s Rsa1.0_00180.1_g00020.1 129 RGRKHLLKNIHRRRS 143 ************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 9.07E-34 | 47 | 141 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 8.0E-56 | 48 | 141 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.6E-35 | 49 | 141 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.2E-17 | 52 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.2E-29 | 52 | 141 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-17 | 90 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 91 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-17 | 103 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MRPEKDGVSK PTPLSIPIST RPESIPLHVD ADVTSPLPMP LDILHGNPIP PFLSKTFDLV 60 DDPSLDPVIS WGLTGASFVV WDPVEFARII LPRNFKHNNF SSFVRQLNTY GFRKIDTDKW 120 EFANEAFLRG RKHLLKNIHR RRSPQSNQAC SSNSQSLGSP TEVGEELEKL RKERRALMEE 180 MVELQQQNRG TARHVDTVNQ RLKAAEQRQK QMLSFLAKLF QNPGFLDRLK NLKGEGGGGA 240 LGFGKARKKF IKHSPTEGEI VKYEADDWER LLMSEEETEN VPLSSQGMMT STDPKGKNLM 300 NPSEEEEEEE MMNQDYLMSF PAPPEGVIKQ EETTWSMGFD TTTIPSFSNE DVWGNTMDYN 360 VSEFGSVAET TSGGCLPDVC WEQFAAGMTE TGFNWPPGDD TTPMDDH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 4e-24 | 49 | 146 | 17 | 125 | Heat shock factor protein 1 |
5d5u_B | 4e-24 | 49 | 141 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-24 | 49 | 141 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-24 | 49 | 141 | 26 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Involved in heat stress response. Activated by DREB2A under heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00180.1_g00020.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117318 | 1e-172 | AK117318.1 Arabidopsis thaliana At5g03720 mRNA for putative heat shock transcription factor, complete cds, clone: RAFL16-88-H09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018445490.1 | 0.0 | PREDICTED: heat stress transcription factor A-3 | ||||
Swissprot | Q8GYY1 | 0.0 | HSFA3_ARATH; Heat stress transcription factor A-3 | ||||
TrEMBL | A0A078FAB7 | 0.0 | A0A078FAB7_BRANA; BnaCnng02620D protein | ||||
TrEMBL | A0A0D3EI36 | 0.0 | A0A0D3EI36_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EQ72 | 0.0 | A0A3P6EQ72_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g181780.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10950 | 25 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03720.1 | 0.0 | heat shock transcription factor A3 |