PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00180.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 267aa    MW: 29297 Da    PI: 7.3577
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00180.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00084183205123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++C+  Fs+   L  H+r+H
  Rsa1.0_00180.1_g00008.1 183 HECSICKAEFSSGQALGGHMRRH 205
                              78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.7E-9109132No hitNo description
PfamPF139121.2E-11109134IPR007087Zinc finger, C2H2
SMARTSM003550.44110132IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.993110137IPR007087Zinc finger, C2H2
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
SuperFamilySSF576671.7E-9178205No hitNo description
Gene3DG3DSA:3.30.160.604.9E-4180207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-12182207IPR007087Zinc finger, C2H2
SMARTSM003550.031183205IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307183207IPR007087Zinc finger, C2H2
PROSITE patternPS000280185205IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MTSVHEETRL VLFVKGKRTK RQRSASPHMN TEAVSGVCSE EPSLEAREGA GEVEFQGATD  60
EDQDMANCLM LLSQGDKAKD SGEQFSTHKI DFLRNKKPLA SIGVGLEGVY LCKTCDKSFH  120
SFQALGGHRA SHKKPRLGEI ALKCDEKRSS STVETVEAAG VVGSFLSLQV TRNDGNKKQE  180
KTHECSICKA EFSSGQALGG HMRRHRGLIV NANATSSHHQ ESIRPKTFLE LDLNLPAPED  240
ESKFVFASKD QILLFTATSN SLIDCHH
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00180.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444396.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A078FAD71e-162A0A078FAD7_BRANA; BnaCnng02770D protein
STRINGBra009525.1-P1e-162(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-137C2H2 family protein