PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00179.1_g00066.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 189aa MW: 21800.3 Da PI: 10.5002 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.7 | 2.1e-18 | 3 | 78 | 22 | 99 |
H.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 22 faeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f +++g+ ++ + +++l +e+g++W++ ++y k sgr+ +++GWk+F+++n+ +++D ++Fkl++ +++++v++++++ Rsa1.0_00179.1_g00066.1 3 FSRSNGLTNR-HGEIILLNEEGKQWRLLMRYHKASGRVCIRSGWKRFCNENRKRANDLLTFKLVR-NGTTPVLQLCSS 78 7788887765.559*************************************************98.78889**99986 PP | |||||||
2 | B3 | 48.7 | 1.4e-15 | 89 | 178 | 1 | 91 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f++ ++++++lks++l+lp kf++++g+++++ ++tl d+ g++ + l+ k gr l+k WkeF++ n++k+g+++ ++l++ Rsa1.0_00179.1_g00066.1 89 FLTLTLTPYSLKSSILRLPVKFVKANGIENAR--KVTLVDRYGNKKSTSLKQYDKYGRLSLGKEWKEFCEVNEVKTGESFKLELIK 172 6778899*******************988555..8********999999977777789**************************98 PP S.SEE. CS B3 87 r.sefe 91 + +e++ Rsa1.0_00179.1_g00066.1 173 EvEEET 178 855554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 1.4E-14 | 1 | 79 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.184 | 1 | 78 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.5E-17 | 2 | 78 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-16 | 3 | 78 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.75E-17 | 3 | 76 | No hit | No description |
SuperFamily | SSF101936 | 3.34E-17 | 3 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-17 | 84 | 187 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.44E-17 | 87 | 175 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.80E-13 | 88 | 173 | No hit | No description |
PROSITE profile | PS50863 | 11.857 | 89 | 188 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.9E-20 | 89 | 189 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-14 | 89 | 181 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MDFSRSNGLT NRHGEIILLN EEGKQWRLLM RYHKASGRVC IRSGWKRFCN ENRKRANDLL 60 TFKLVRNGTT PVLQLCSSSS SSKTKPCRFL TLTLTPYSLK SSILRLPVKF VKANGIENAR 120 KVTLVDRYGN KKSTSLKQYD KYGRLSLGKE WKEFCEVNEV KTGESFKLEL IKEVEEETAT 180 HLLKFCSKV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00179.1_g00066.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189431 | 1e-109 | AC189431.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068B07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022572045.1 | 1e-113 | B3 domain-containing protein REM10-like | ||||
TrEMBL | A0A398A0Q2 | 1e-105 | A0A398A0Q2_BRACM; Uncharacterized protein | ||||
STRING | Bra001387.1-P | 2e-92 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31615.1 | 2e-38 | B3 family protein |