PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G31615.1 | ||||||||
Common Name | F28M20.2, REM2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 487aa MW: 55036.1 Da PI: 8.845 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.9 | 1.8e-13 | 25 | 100 | 15 | 96 |
-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 15 rlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++p +f++++ +gk+++s++l+l++ r+Wevkl ++++ +++GW++F + L++ D+v+F+ +g+++f +v++ AT4G31615.1 25 SPMIPAEFFSTYvEGKNHQSTKLKLTSdAFDRTWEVKL--NGRR----FAGGWENFSTVHSLQDDDVVIFREIGDMTF--HVTA 100 479**********8888999*****996778*******..8887....99*********************8898888..6665 PP | |||||||
2 | B3 | 63.2 | 4.1e-20 | 155 | 245 | 5 | 97 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +++++l+++rl+l k fa+++g+++++ ++ l++++g+sW++ l+y+ ++ +++GW++F+ ngL++g f Fkl+++ +++++++++ AT4G31615.1 155 HVTPSNLSRDRLYLIKAFARSNGLNERCC-EIDLMNKHGKSWTLGLRYSTVNDQASISGGWRDFCLVNGLEAGSFYRFKLVQN-GERPLLRLC 245 67999********************8775.******************88888889************************995.555777665 PP | |||||||
3 | B3 | 73.6 | 2.4e-23 | 274 | 372 | 1 | 100 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f++ + ++++lksg+l+l+++fa e+++k++e ++tl d++g W ++ ++++g+y+l+kGW++F+ an+Lk+g+++++++++ +++++++k++ AT4G31615.1 274 FLTMTFKPYMLKSGQLRLSRPFAIENEIKEAE--DITLVDKNGGNWPSYVASgDGQGGKYYLAKGWRSFCAANRLKTGETFTLEFVRGEGTTPMLKFC 369 66777899******************999777..7***************767999999***************************99********** PP -SS CS B3 98 rks 100 +ks AT4G31615.1 370 SKS 372 985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-15 | 7 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-16 | 7 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.842 | 11 | 104 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.66E-11 | 12 | 99 | No hit | No description |
SMART | SM01019 | 5.3E-18 | 14 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-7 | 26 | 98 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-20 | 144 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.24E-20 | 146 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.1E-27 | 151 | 248 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.69 | 151 | 247 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.45E-20 | 151 | 245 | No hit | No description |
Pfam | PF02362 | 1.3E-18 | 154 | 245 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-17 | 268 | 371 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-18 | 274 | 373 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 9.3E-22 | 274 | 371 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-29 | 274 | 372 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.494 | 274 | 371 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.84E-16 | 274 | 362 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009046 | anatomy | flower | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MDDPAISSPT NKHFFVIVLH GHKSSPMIPA EFFSTYVEGK NHQSTKLKLT SDAFDRTWEV 60 KLNGRRFAGG WENFSTVHSL QDDDVVIFRE IGDMTFHVTA SGRSFCKLQY ISSDEDRADE 120 DDAWNVYSDS KNIVSKKKPR TEAESSSKNY YLVAHVTPSN LSRDRLYLIK AFARSNGLNE 180 RCCEIDLMNK HGKSWTLGLR YSTVNDQASI SGGWRDFCLV NGLEAGSFYR FKLVQNGERP 240 LLRLCYDTIP EEDCYKGNRK VNLSESASMK QGKFLTMTFK PYMLKSGQLR LSRPFAIENE 300 IKEAEDITLV DKNGGNWPSY VASGDGQGGK YYLAKGWRSF CAANRLKTGE TFTLEFVRGE 360 GTTPMLKFCS KSKDKIEQVP FDEGGETQEE TETRVKKRAR VSAERGSSRR NQASNKPNAD 420 PQNLQPGQPH CSISDQVQKV KQIIVDTLTG IKRIRSELER KGQKLEASIL EIDALGEKVS 480 EINKILK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.31732 | 0.0 | silique |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 186515273 | 0.0 | ||||
Genevisible | 253540_at | 1e-126 | ||||
Expression Atlas | AT4G31615 | - | ||||
AtGenExpress | AT4G31615 | - | ||||
ATTED-II | AT4G31615 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G31615.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G31615 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493713 | 0.0 | AB493713.1 Arabidopsis thaliana At4g31615 mRNA for hypothetical protein, partial cds, clone: RAAt4g31615. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_680753.2 | 0.0 | Transcriptional factor B3 family protein | ||||
Swissprot | Q3E9T2 | 0.0 | REM2_ARATH; B3 domain-containing protein REM2 | ||||
TrEMBL | A0A178UZV3 | 0.0 | A0A178UZV3_ARATH; Uncharacterized protein | ||||
STRING | AT4G31615.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9658 | 15 | 37 | Representative plant | OGRP2682 | 2 | 31 |
Link Out ? help Back to Top | |
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Phytozome | AT4G31615.1 |
Entrez Gene | 829289 |
iHOP | AT4G31615 |
wikigenes | AT4G31615 |
Publications ? help Back to Top | |||
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