PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00176.1_g00014.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 496aa    MW: 52912.7 Da    PI: 8.1284
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00176.1_g00014.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-056486123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C++C+k F r  nL+ H r H
  Rsa1.0_00176.1_g00014.1 64 FVCEICSKGFQRDQNLQLHRRGH 86
                             89*******************88 PP
2zf-C2H215.64.6e-05140162123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ykC++C+ks+  +s+ k H + +
  Rsa1.0_00176.1_g00014.1 140 YKCEKCSKSYAVQSDWKAHSKIC 162
                              9******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.64E-76386No hitNo description
Gene3DG3DSA:3.30.160.605.9E-56386IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8876486IPR007087Zinc finger, C2H2
SMARTSM003550.0366486IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM0035587105135IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.1E-5128161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.64E-7135160No hitNo description
SMARTSM0035565140160IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MPVELDDYST VSGDASVSST GNQNQNTPAP QSLSKKKRNL PGMPDPEAEV IALSPKTLMA  60
TNRFVCEICS KGFQRDQNLQ LHRRGHNLPW KLRQRSSKEV KKKVYVCPVS GCVHHEPSRA  120
LGDLTGIKKH FCRKHGEKKY KCEKCSKSYA VQSDWKAHSK ICGTKEYRCD CGTLFSRRDS  180
FITHRAFCDV LAEESAKKKL YPETYTRKNH LPEPELKSPP AALVDSPPSV ALVPAPAVSV  240
ETEPEHDETE TANIASSSVL PIRDSSESPE NITLQVIMEE APRRIGLNGS NDHNSNNNKS  300
VYAGLFASSS TASPSLYAAS SSTPPPSLYP PSSSIEPISL CLSTTTPSLF GATIQDPPPP  360
HFLTPMSLPP PQPAISATAL LQKAAQMGST GSGGSLLRGL GIVSTTSSPM ELSSSHDTGF  420
GLGLGLPCSS GTGLKELMMG NSSVFDPKQT TLDFLGLGRA VGNNNPGGGA LWGGGGGMDV  480
FGSGELSDKD ISRRSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-32136197364Zinc finger protein JACKDAW
5b3h_F2e-32136197364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00176.1_g00014.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892250.0AC189225.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB011P07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018457878.10.0PREDICTED: protein indeterminate-domain 1-like
SwissprotQ9LVQ70.0IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLM4F7U00.0M4F7U0_BRARP; Uncharacterized protein
STRINGBra037151.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.10.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]