PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00166.1_g00017.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 384aa MW: 43517.7 Da PI: 9.7726

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00166.1_g00017.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179	1.2e-55	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdeel+++yL+kkv + ++++ ++i evd +k+ePw+Lp ++k +ekewyfF+ rdkky+tg r+nrat++gyWkat Rsa1.0_00166.1_g00017.1 16 LPPGFRFHPTDEELITQYLHKKVLDISFSA-KAIGEVDFNKSEPWELPWMAKMGEKEWYFFCVRDKKYPTGLRTNRATEAGYWKAT 100 79************************99.88***********8888899*************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 gkdke+++ +++lvg+kktLvfy+grapkg+kt+Wvmheyrle Rsa1.0_00166.1_g00017.1 101 GKDKEIYR-GKTLVGMKKTLVFYRGRAPKGQKTNWVMHEYRLE 142 ****.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-63	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.027	16	166	IPR003441	NAC domain
Pfam	PF02365	2.8E-29	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
METFCGFQKE EEQMDLPPGF RFHPTDEELI TQYLHKKVLD ISFSAKAIGE VDFNKSEPWE 60 LPWMAKMGEK EWYFFCVRDK KYPTGLRTNR ATEAGYWKAT GKDKEIYRGK TLVGMKKTLV 120 FYRGRAPKGQ KTNWVMHEYR LEGKLSPHNL PKTAKKEWVI CRVFQKTAGG KKIPISSLIR 180 IGSLGTGFNP SPLSHLTDDS SYNDKTKTEP VYVPCFSNQT DQLQGNTFNC FSSPVFNSTQ 240 ADIFHRLPLY QSSMLAQERS ALQAMIDNNT RQSLKAMSVS QETAVSTDMN DTSSDFEYAK 300 SLMSTDLLSS VMKESELRVR PNFLSRVRES RRRQPPSSST PVRPMAAGVG ISCSALVPHH 360 RLLVLLRYPS TSPSSVALAT TNLF

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

METFCGFQKE EEQMDLPPGF RFHPTDEELI TQYLHKKVLD ISFSAKAIGE VDFNKSEPWE  60
LPWMAKMGEK EWYFFCVRDK KYPTGLRTNR ATEAGYWKAT GKDKEIYRGK TLVGMKKTLV  120
FYRGRAPKGQ KTNWVMHEYR LEGKLSPHNL PKTAKKEWVI CRVFQKTAGG KKIPISSLIR  180
IGSLGTGFNP SPLSHLTDDS SYNDKTKTEP VYVPCFSNQT DQLQGNTFNC FSSPVFNSTQ  240
ADIFHRLPLY QSSMLAQERS ALQAMIDNNT RQSLKAMSVS QETAVSTDMN DTSSDFEYAK  300
SLMSTDLLSS VMKESELRVR PNFLSRVRES RRRQPPSSST PVRPMAAGVG ISCSALVPHH  360
RLLVLLRYPS TSPSSVALAT TNLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-54	13	172	17	174	NAC domain-containing protein 19
3swm_B	1e-54	13	172	17	174	NAC domain-containing protein 19
3swm_C	1e-54	13	172	17	174	NAC domain-containing protein 19
3swm_D	1e-54	13	172	17	174	NAC domain-containing protein 19
3swp_A	1e-54	13	172	17	174	NAC domain-containing protein 19
3swp_B	1e-54	13	172	17	174	NAC domain-containing protein 19
3swp_C	1e-54	13	172	17	174	NAC domain-containing protein 19
3swp_D	1e-54	13	172	17	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00166.1_g00017.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC966745	0.0	KC966745.1 Brassica napus NAC transcription factor 100 (NAC100.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018433507.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Refseq	XP_018433512.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	0.0	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0A7BWT0	0.0	A0A0A7BWT0_BRANA; NAC transcription factor 100
STRING	Bra029313.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	0.0	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]