PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00163.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family AP2
Protein Properties Length: 227aa    MW: 25232.5 Da    PI: 7.9928
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00163.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.85.3e-08525122
                      AP2  1 sgykGVrwdkkrgrWvAeIrdp 22
                             ++++GVr+++ +g+WvAeIr+p
  Rsa1.0_00163.1_g00005.1  5 KKFRGVRQRH-WGSWVAEIRHP 25
                             59*******9.*********96 PP

2AP229.22.2e-0963892753
                      AP2 27 krkrfslgkfgtaeeAakaaiaarkkl 53
                             +++r++lg+f tae+Aa+a+++a+  +
  Rsa1.0_00163.1_g00005.1 63 RKRRIWLGTFETAEDAARAYDEAAVLM 89
                             56*********************9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.11E-26599No hitNo description
SMARTSM003804.4E-346105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-32627IPR001471AP2/ERF domain
PROSITE profilePS5103221.667699IPR001471AP2/ERF domain
PRINTSPR003672.8E-10718IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-1262101IPR016177DNA-binding domain
PfamPF008476.2E-56386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-3263100IPR001471AP2/ERF domain
PRINTSPR003672.8E-106581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MVQTKKFRGV RQRHWGSWVA EIRHPLLYHS SFFPFLCFVH LFPLADAFNL RLIRTIFYNM  60
HERKRRIWLG TFETAEDAAR AYDEAAVLMS GRNAKTNFPL NNNNTGDTSE RKTDISASPS  120
SSSLSSILSA KLRKCCKSPS PSLTCLRLDT ASSHIGVWQK RAGSKSDSGW VMTLELGTSG  180
SSQEPTSTVS KEVVGPATDV GDGGEEGLMD EEEKVALQMI EELLNTN
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00163.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1666231e-140DQ166623.1 Brassica juncea AP2 transcription factor (SHN1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450020.11e-127PREDICTED: ethylene-responsive transcription factor WIN1-like
SwissprotQ9XI333e-95WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A178WNC47e-93A0A178WNC4_ARATH; WIN1
STRINGXP_010459068.18e-94(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.12e-78ERF family protein
Publications ? help Back to Top
  1. Taketa S, et al.
    Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(10): p. 4062-7
    [PMID:18316719]
  2. Al-Abdallat AM,Al-Debei HS,Ayad JY,Hasan S
    Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato.
    Int J Mol Sci, 2014. 15(11): p. 19499-515
    [PMID:25350113]
  3. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  4. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]
  5. Sajeevan RS, et al.
    Expression of Arabidopsis SHN1 in Indian Mulberry (Morus indica L.) Increases Leaf Surface Wax Content and Reduces Post-harvest Water Loss.
    Front Plant Sci, 2017. 8: p. 418
    [PMID:28421085]