PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00157.1_g00038.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 285aa    MW: 31655.8 Da    PI: 9.2936
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00157.1_g00038.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.41.2e-20204238135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              Cs+C tt+Tp+WR+gp+g+ktLCnaCG+++r+ +l
  Rsa1.0_00157.1_g00038.1 204 CSHCETTETPQWREGPNGPKTLCNACGVRFRSGRL 238
                              *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577168.55E-16196260No hitNo description
PROSITE profilePS5011412.11198234IPR000679Zinc finger, GATA-type
SMARTSM004016.5E-20198248IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-15202235IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.01E-17203260No hitNo description
PROSITE patternPS003440204229IPR000679Zinc finger, GATA-type
PfamPF003201.5E-18204238IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MNWSLPDEGL SEGFFDDFLN SLPDIDIDCD EDTTDGAVED WKAKFQHLEP PPMDGFTSLP  60
TEFTSSCGIN TKLSPVGTTV PVLKQSGACG PLSGINSTLH QASSPHDIKV SKMFQSLSPV  120
SVLESSDRSF SPHNSRLQRL TSPVKGMRSK RKRPTTLRFK YLHQLEPSKP ENSTPGGSGL  180
KTYYDFEQHA KKKRRVSAKV ARICSHCETT ETPQWREGPN GPKTLCNACG VRFRSGRLVP  240
EYRPASSPTF VPSVHSNSHK KIIEMRRKEG VQFHTSMIHG VISRA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190194KKKRR
2190195KKKRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00157.1_g00038.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895180.0AC189518.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB090M17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018451387.10.0PREDICTED: GATA transcription factor 11-like isoform X1
RefseqXP_018451388.10.0PREDICTED: GATA transcription factor 11-like isoform X1
SwissprotQ6DBP81e-111GAT11_ARATH; GATA transcription factor 11
TrEMBLA0A397YQP61e-156A0A397YQP6_BRACM; Uncharacterized protein
TrEMBLM4EPI91e-156M4EPI9_BRARP; Uncharacterized protein
STRINGBra030709.1-P1e-157(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-104GATA transcription factor 11