PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00155.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 649aa    MW: 72147.5 Da    PI: 5.7899
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00155.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix98.27e-3157141187
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              rW+++e+laL+++r+em++++r++ lk+plWe+vs+k+ e g++rs+k+Ckek+en++k+yk++ke++++r   + +t+++f+qle
  Rsa1.0_00155.1_g00010.1  57 RWPREETLALLRIRSEMDSTFRDATLKAPLWEHVSRKLLELGYKRSAKKCKEKFENVQKYYKRTKETRGGR--HDGKTYKFFSQLE 140
                              8********************************************************************98..45567*******8 PP

                 trihelix  87 a 87 
                              a
  Rsa1.0_00155.1_g00010.1 141 A 141
                              5 PP
2trihelix1041.1e-32416500186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              rW+k e+laLi++r+ me r++++  k+ lWee+s+ m++ g++r++k+Ckekwen+nk+ykk+ke++k+r +++ +tcpyf++l+
  Rsa1.0_00155.1_g00010.1 416 RWPKAEILALINLRSGMEPRYQDNVPKGLLWEEISSSMKRMGYNRNAKRCKEKWENINKYYKKVKESNKER-PQDAKTCPYFHRLD 500
                              8*********************************************************************8.99999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.10850114IPR017877Myb-like domain
SMARTSM007170.003154116IPR001005SANT/Myb domain
PfamPF138375.6E-2156142No hitNo description
CDDcd122037.19E-2756121No hitNo description
PROSITE profilePS500906.922409473IPR017877Myb-like domain
SMARTSM007170.0045413475IPR001005SANT/Myb domain
PfamPF138377.7E-22415500No hitNo description
CDDcd122031.65E-29416480No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MEQGVGGGGN EVVEEASPIS SRPPANMEEL MRFSAAADDG GGLGGGGGSS SSSSGNRWPR  60
EETLALLRIR SEMDSTFRDA TLKAPLWEHV SRKLLELGYK RSAKKCKEKF ENVQKYYKRT  120
KETRGGRHDG KTYKFFSQLE ALNTTTPPSS SLDATPLSVA NPIQPPPSSS PFPVFPPLPQ  180
TQLHSVSFTP NAAPPPPPPP APMGPTFPGV TFSSHSSSTA SGMGSDDEEE DIMDVDQAGP  240
SSRKRKRGNR GRRGGKMMEL FEGLVRQVMQ KQAAMQRSFL EALEKREQER LHREEAWKRQ  300
EMSRLAREHE IMSQERAASA ARDAAIISLI QKITGHTIQL PPSLSSQPSP PPPPPPAAKR  360
PSSQPQLQPI MAIPQQQVLP PPPPPQPQQQ QQQPPPPQQQ EMIMSTDQSS SPSSSRWPKA  420
EILALINLRS GMEPRYQDNV PKGLLWEEIS SSMKRMGYNR NAKRCKEKWE NINKYYKKVK  480
ESNKERPQDA KTCPYFHRLD LLYRNKVLGT GGSSSASGLP QDQTSTVQKQ SPVSAVKPPQ  540
GAVGSASSEE EDAREESPQG TEKPEDLVMK ELMQRQQQEQ QQDSMISEYE KIEESHNYNN  600
MEEEEEEEEE MDEELDEDEK SAAYEVAFQS PANRGGNGHT EPPFLTMVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199107KRSAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269|PubMed:19717615, ECO:0000269|PubMed:21169508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00155.1_g00010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by water stress. {ECO:0000269|PubMed:21169508}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0210451e-140AC021045.2 Arabidopsis thaliana chromosome I BAC T9L6 genomic sequence, complete sequence.
GenBankAC0270351e-140AC027035.5 Arabidopsis thaliana chromosome 1 BAC T16O9 genomic sequence, complete sequence.
GenBankAJ0032151e-140AJ003215.1 Arabidopsis thaliana GTL1 gene.
GenBankCP0026841e-140CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438652.10.0PREDICTED: trihelix transcription factor GTL1 isoform X1
SwissprotQ9C8820.0GTL1_ARATH; Trihelix transcription factor GTL1
TrEMBLA0A397Y2Y60.0A0A397Y2Y6_BRACM; Uncharacterized protein
TrEMBLM4FFY60.0M4FFY6_BRARP; Uncharacterized protein
STRINGBra040010.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62262746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.10.0GT-2-like 1
Publications ? help Back to Top
  1. Caro E,Desvoyes B,Gutierrez C
    GTL1 keeps cell growth and nuclear ploidy under control.
    EMBO J., 2012. 31(24): p. 4483-5
    [PMID:23188085]
  2. Zheng X, et al.
    The Wheat GT Factor TaGT2L1D Negatively Regulates Drought Tolerance and Plant Development.
    Sci Rep, 2016. 6: p. 27042
    [PMID:27245096]
  3. Shibata M, et al.
    GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis.
    Development, 2018.
    [PMID:29439132]