PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00123.1_g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | G2-like | ||||||||
Protein Properties | Length: 271aa MW: 29972.2 Da PI: 8.1457 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97 | 1.4e-30 | 77 | 130 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Rsa1.0_00123.1_g00012.1 77 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 130 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.66E-20 | 74 | 134 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.059 | 74 | 133 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-31 | 76 | 135 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-24 | 78 | 130 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.7E-8 | 80 | 129 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MREEDSNWFA KWEEELPSPE ELIPLSQSLI TPDXGRRASI AGGAHTPHQT TPPQQTNSSA 60 EFAADSTGDE PARTLKRPRL VWTPQLHKRF VDAVAHLGIK NAVPKTIMQL MSVDGLTREN 120 VASHLQKYRL YLKRMQSGGG GGGGSVGDSD HLFASSPVPT HFLHPTARQS SDHFIPSFVP 180 IAALQHQHRQ QQPPPQFLHR QISAVNFTSQ GNNSGKAMDQ SLFLARQSQQ QQQQVTARPS 240 SLHLHSQVAN YADDLEQGAN TVLTLFPTRE N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 7e-32 | 77 | 133 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00056 | PBM | Transfer from AT5G05090 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00123.1_g00012.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018442772.1 | 1e-147 | PREDICTED: transcription factor PCL1-like | ||||
Swissprot | O22210 | 3e-53 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | A0A0D3CA85 | 1e-135 | A0A0D3CA85_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g019990.1 | 1e-136 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1549 | 27 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05090.1 | 1e-100 | G2-like family protein |
Publications ? help Back to Top | |||
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