PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00104.1_g00053.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Nin-like
Protein Properties Length: 283aa    MW: 32521.8 Da    PI: 5.9556
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00104.1_g00053.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK758.9e-24117166352
                   RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                              k +s e++s+yF+ pi++AA eL+v+lT+LKr+CR++G +RWPhRk+ sl
  Rsa1.0_00104.1_g00053.1 117 KALSKETISRYFYVPITQAAMELDVGLTLLKRRCRELGFRRWPHRKLMSL 166
                              789********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.33599186IPR003035RWP-RK domain
PfamPF020422.2E-19119166IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MADHKLKEER PFSFLTYSPS FDDHISLTFP SFEWEEELLP LHNNFVSQSF HLPTITLPLP  60
DLESLSQDVL NTYSSTEQNR GEGDLEKNTK KRKLNIEEHS VGIISDITTY TNFPGSKALS  120
KETISRYFYV PITQAAMELD VGLTLLKRRC RELGFRRWPH RKLMSLLALI NNVKERQKMD  180
GGENTGIFKN AVEILEDERR RIEENPDLEF TDKTKRLRQA CFKATHKMKK KKRSLKSEMS  240
IIPSSSSSGS VVSEEESVIE GIESDDEEVK YLLCGFTSEF SGL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00234DAPTransfer from AT1G74480Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00104.1_g00053.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895741e-104AC189574.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011B08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446924.10.0PREDICTED: protein RKD2
SwissprotQ9CA661e-108RKD2_ARATH; Protein RKD2
TrEMBLA0A3P6BTQ61e-164A0A3P6BTQ6_BRACM; Uncharacterized protein
STRINGBra015907.1-P1e-163(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39662356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74480.13e-96RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H
    RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis.
    New Phytol., 2017. 213(4): p. 1909-1924
    [PMID:27870062]