PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00100.1_g00020.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 398aa    MW: 45633.4 Da    PI: 4.954
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00100.1_g00020.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.39.6e-132363391114
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                              lp G++F+Pt  e+   +Lk+k+ g+++++  v +e  di+++ P+dLp   + ee++wy+++ + k    g++  r    + W  
  Rsa1.0_00100.1_g00020.1 236 LPEGIHFRPTSLEMS-IFLKQKALGQPVTACIVPEERhDIFSIPPRDLPG--YPEERHWYYYCMKPK----GQQDPR----SLWTR 310
                              699**********97.9**********99977755556***********4..35789******9866....667777....48*** PP

                      NAM  86 tgkdkevlskkgelvglkktLvfykgrap 114
                                +d++v++ +++ vg+k+ +++ + +++
  Rsa1.0_00100.1_g00020.1 311 FREDTAVFDLEENCVGIKRRFTLTEREEE 339
                              *********9***********99965444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5113810.44374160IPR005491ENT domain
SMARTSM011910.005474148IPR005491ENT domain
PfamPF037352.0E-975129IPR005491ENT domain
SuperFamilySSF1586394.05E-575129IPR005491ENT domain
SMARTSM011911.3170240IPR005491ENT domain
PfamPF037357.3E-6173207IPR005491ENT domain
SuperFamilySSF1019417.06E-17234381IPR003441NAC domain
PROSITE profilePS5100517.922236381IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MADKKDLDPN PLAGLIVSGQ WLVLDSSAFL LFLSASNLDS VTPCNVEDGT FLCPLNKRTM  60
AERSFTRAHE PGFKKQKLEQ LQRKAYHSVL LASKSEPSGT SHNKSQIIQK LMNEWNIDQE  120
THISVSEKID LSANNATWSP NSLLNPESLA GKRVHARSPN DEEDDSPTSK KIKLHKQAYD  180
HVLHAFNAES PALSHSRTLI MQDLLEECNK AHIKTDPPLV EAFNTPKIVE PRSRLLPEGI  240
HFRPTSLEMS IFLKQKALGQ PVTACIVPEE RHDIFSIPPR DLPGYPEERH WYYYCMKPKG  300
QQDPRSLWTR FREDTAVFDL EENCVGIKRR FTLTEREEES DDDIFLPDEE EPPVEEWFIR  360
EISLPSSVAD TDLVLCHVVL KMKKKTQDEE YYEEEEDE
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00100.1_g00020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894564e-86AC189456.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073D09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490829.10.0PREDICTED: uncharacterized protein LOC108861462
TrEMBLA0A3P5Y5V91e-180A0A3P5Y5V9_BRACM; Uncharacterized protein
STRINGBo8g090950.11e-162(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1945367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.17e-50NAC family protein