PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00099.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 212aa MW: 23605.5 Da PI: 3.8664 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.9 | 3.6e-13 | 14 | 102 | 1 | 92 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFk 83 ffkv +p d++ l +p +f ++ ++k + +++++ g+ W++kl rk+ g + + +GWk+ vk+ +Lk g+f+ F+ Rsa1.0_00099.1_g00007.1 14 FFKVYLPDDSGD--DLDIPISFN-SY-LPKSLPEYIIVRSIYGNIWKLKL--RKRCGNvekISMVNGWKRIVKDEDLKGGEFLGFE 93 788886666554..59******8.77.45668889***************..4444444559999********************* PP E-SSSEE.. CS B3 84 ldgrsefel 92 +dg++ f++ Rsa1.0_00099.1_g00007.1 94 FDGSRLFNF 102 998666643 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.7E-16 | 7 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.29E-18 | 7 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.406 | 12 | 108 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.18E-15 | 12 | 105 | No hit | No description |
Pfam | PF02362 | 6.5E-11 | 14 | 102 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.2E-14 | 14 | 108 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MNKGDSSDDC IPKFFKVYLP DDSGDDLDIP ISFNSYLPKS LPEYIIVRSI YGNIWKLKLR 60 KRCGNVEKIS MVNGWKRIVK DEDLKGGEFL GFEFDGSRLF NFCIYGHATC KRLGNSVKTK 120 ESKDGSESAD IIVIDDDDDD DDDDDNQDSG DEDIVVIDDD SSNDVSSGQG SGMEDQSTKD 180 IIVIDEDSSD GDYTDADEDD DGRSGVETEL RE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 2e-15 | 4 | 110 | 1 | 104 | At1g16640 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00099.1_g00007.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018455147.1 | 1e-115 | PREDICTED: B3 domain-containing protein At5g60142-like | ||||
Swissprot | Q9LST3 | 2e-62 | Y5142_ARATH; B3 domain-containing protein At5g60142 | ||||
TrEMBL | A0A397XS61 | 2e-90 | A0A397XS61_BRACM; Uncharacterized protein | ||||
STRING | Bo9g141120.1 | 3e-83 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4947 | 18 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60142.1 | 2e-63 | B3 family protein |