PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00096.1_g00016.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 258aa    MW: 29347.7 Da    PI: 6.118
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00096.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.52.4e-22101161259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dg++WrKYGqK++k s + r YYrC++a   +C++ k+v++ ++ p+++ +tY g+H +e
  Rsa1.0_00096.1_g00016.1 101 NDGFSWRKYGQKTIKTSSHQRCYYRCAYAkdrNCNALKRVQQIEDSPSLFRTTYVGKHICE 161
                              8***************************99999*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.75195163IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-2395161IPR003657WRKY domain
SuperFamilySSF1182904.58E-2298162IPR003657WRKY domain
SMARTSM007748.6E-32100162IPR003657WRKY domain
PfamPF031069.0E-23101160IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MSHGVDKAVE ALLRGQESAY RLKTVLEHAS SVPTEPLFDS VLHSFSFALS LFASSNTQPP  60
HRESSQRKPT PVVARKSPKK NSHGEEGLEQ YSHDSPNPHH NDGFSWRKYG QKTIKTSSHQ  120
RCYYRCAYAK DRNCNALKRV QQIEDSPSLF RTTYVGKHIC EVNAFFQLND DICNGSKMIR  180
FDKIDQAMPD SVIPQPVPVE QDAILIESTD QNMNLECGSN EFLVDDDQLW GYQIPPCSPG  240
NFMFLDDLSE FDYNPFHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-15101161969OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00096.1_g00016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300720.0KF430072.1 Brassica rapa WRKY transcription factor 66 (WRKY66) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018512184.11e-166PREDICTED: probable WRKY transcription factor 63 isoform X2
SwissprotQ93WV72e-76WRK67_ARATH; Probable WRKY transcription factor 67
TrEMBLA0A078K1991e-166A0A078K199_BRANA; BnaAnng38320D protein
TrEMBLA0A398ABX41e-166A0A398ABX4_BRACM; Uncharacterized protein
STRINGBra008459.1-P1e-166(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66550.21e-73WRKY DNA-binding protein 67