PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00092.1_g00029.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TALE
Protein Properties Length: 371aa    MW: 42034.9 Da    PI: 6.2334
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00092.1_g00029.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.6e-073153482154
                              HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              k +yp++e++++L +++gL+ +q+ +WF N+R +
  Rsa1.0_00092.1_g00029.1 315 KWPYPTEEDKARLVEETGLQLKQINNWFINQRKR 348
                              579*****************************87 PP
2ELK26.91.1e-09269290122
                      ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                              ELKh+L+++++++++++++E++
  Rsa1.0_00092.1_g00029.1 269 ELKHELKQGFKEKIVDIREEIM 290
                              9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.4E-18103147IPR005540KNOX1
PfamPF037904.2E-16106146IPR005540KNOX1
SMARTSM012564.1E-25153209IPR005541KNOX2
PfamPF037914.9E-19160208IPR005541KNOX2
PROSITE profilePS512139.446269289IPR005539ELK domain
PfamPF037892.8E-6269290IPR005539ELK domain
SMARTSM011886.2E-4269290IPR005539ELK domain
PROSITE profilePS5007111.953289352IPR001356Homeobox domain
SuperFamilySSF466891.24E-15291356IPR009057Homeodomain-like
SMARTSM003895.0E-10291356IPR001356Homeobox domain
CDDcd000861.72E-10292348No hitNo description
Gene3DG3DSA:1.10.10.602.4E-24296354IPR009057Homeodomain-like
PfamPF059202.1E-17309348IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSFNSSHLFP PQEELRHFSD QSHQPPSLLN LPPTTTATSN SDFTHPHRNG DSPAAAAAAA  60
TNRRWLSFHH TEIQNTGEVD PPEVNDAADG ETIHGGEEDW RRASEKGAIL KHPMYEQLLA  120
AHVACLRVAT PVDQIPRIDA QLSQLHTVAA KYSSLGVGMD NKELDHFMSH YVVLLCSFKE  180
QLQHHVCVHA LEAITACWEI EQSLQSITGV SPSESNGKTM SDDEEDDNQV ESEANMFDET  240
LDGSDCMVGF GPLVPTERER SLLERVKKEL KHELKQGFKE KIVDIREEIM RKRRAGKLPG  300
DTTSVLKEWW RTHAKWPYPT EEDKARLVEE TGLQLKQINN WFINQRKRNW NSNSSTSSTL  360
SKNKRKRTEK S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1345366RKRNWNSNSSTSSTLSKNKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00092.1_g00029.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525800.0AK352580.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-I15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480250.10.0PREDICTED: homeobox protein knotted-1-like 5
SwissprotP480020.0KNAT5_ARATH; Homeobox protein knotted-1-like 5
TrEMBLA0A078FKE90.0A0A078FKE9_BRANA; BnaA03g51900D protein
STRINGBra023965.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32040.10.0KNOTTED1-like homeobox gene 5