PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G32040.1 | ||||||||
Common Name | F10N7.150, KNAT5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TALE | ||||||||
Protein Properties | Length: 383aa MW: 43283.6 Da PI: 6.4579 | ||||||||
Description | KNOTTED1-like homeobox gene 5 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.7 | 8.3e-08 | 327 | 360 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + AT4G32040.1 327 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 360 569*****************************87 PP | |||||||
2 | ELK | 26.8 | 1.2e-09 | 281 | 302 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++++++++++++E++ AT4G32040.1 281 ELKHELKQGFKEKIVDIREEIM 302 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 3.1E-19 | 116 | 160 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.8E-17 | 118 | 159 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.0E-26 | 167 | 222 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.4E-19 | 171 | 221 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.446 | 281 | 301 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.9E-6 | 281 | 302 | IPR005539 | ELK domain |
SMART | SM01188 | 6.2E-4 | 281 | 302 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.985 | 301 | 364 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.0E-10 | 303 | 368 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.92E-15 | 303 | 367 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.88E-11 | 304 | 360 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-25 | 308 | 366 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.7E-17 | 321 | 360 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009727 | Biological Process | detection of ethylene stimulus | ||||
GO:0071369 | Biological Process | cellular response to ethylene stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0003000 | anatomy | transition zone | ||||
PO:0006036 | anatomy | root epidermis | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025181 | anatomy | root elongation zone | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001031 | developmental stage | 4 root elongation stage | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MSFNSSHLLP PQEDLPLRHF TDQSQQPPPQ RHFSETPSLV TASFLNLPTT LTTADSDLAP 60 PHRNGDNSVA DTNPRWLSFH SEMQNTGEVR SEVIDGVNAD GETILGVVGG EDWRSASYKA 120 AILRHPMYEQ LLAAHVACLR VATPVDQIPR IDAQLSQLHT VAAKYSTLGV VVDNKELDHF 180 MSHYVVLLCS FKEQLQHHVC VHAMEAITAC WEIEQSLQSL TGVSPSESNG KTMSDDEDDN 240 QVESEVNMFD GSLDGSDCLM GFGPLVPTER ERSLMERVKK ELKHELKQGF KEKIVDIREE 300 IMRKRRAGKL PGDTTSVLKE WWRTHSKWPY PTEEDKAKLV QETGLQLKQI NNWFINQRKR 360 NWNSNSSTSS TLTKNKRKRT GKS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 357 | 378 | RKRNWNSNSSTSSTLTKNKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.20704 | 0.0 | flower| root| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 42567321 | 0.0 | ||||
Genevisible | 253466_at | 0.0 | ||||
Expression Atlas | AT4G32040 | - | ||||
AtGenExpress | AT4G32040 | - | ||||
ATTED-II | AT4G32040 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | A member of Class II KN1-like homeodomain transcription factors factors (together with KNAT3 and KNAT4), with greatest homology to the maize knox1 homeobox protein. Regulates photomorphogenic responses and represses late steps in gibberellin biosynthesis. KNAT5 promoter activity showed cell-type specific pattern along longitudinal root axis, primarily in the epidermis of the distal end of primary root elongation zone. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G32040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Regulation -- Hormone ? help Back to Top | ||||||
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Source | Hormone | |||||
AHD | ethylene |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT4G32040, AT4G34610, AT4G36870, AT5G02030, AT5G41410, AT1G19700, AT1G23380, AT1G26260, AT1G62990, AT1G75410 | |||||
IntAct | Search P48002 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G32040 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF306661 | 0.0 | AF306661.1 Arabidopsis thaliana homeodomain transcription factor KNAT5 (KNAT5) mRNA, complete cds. | |||
GenBank | BT026033 | 0.0 | BT026033.1 Arabidopsis thaliana At4g32040 mRNA, complete cds. | |||
GenBank | D43962 | 0.0 | D43962.1 Arabidopsis thaliana mRNA for homeodomein containing protein 1, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_194932.1 | 0.0 | homeobox protein knotted-1-like 5 | ||||
Swissprot | P48002 | 0.0 | KNAT5_ARATH; Homeobox protein knotted-1-like 5 | ||||
TrEMBL | A0A178V1Z3 | 0.0 | A0A178V1Z3_ARATH; KNAT5 | ||||
STRING | AT4G32040.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM444 | 28 | 158 | Representative plant | OGRP167 | 17 | 148 |
Link Out ? help Back to Top | |
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Phytozome | AT4G32040.1 |
Entrez Gene | 829335 |
iHOP | AT4G32040 |
wikigenes | AT4G32040 |