PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00089.1_g00022.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 287aa    MW: 32466.5 Da    PI: 6.5212
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00089.1_g00022.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.12e-1222631050
                             HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
                   SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                             + ++  R +++lKKA+ELS LC+++v++i +  +g+l  +++
  Rsa1.0_00089.1_g00022.1 22 SSSYKARAATVLKKAFELSELCGIDVCIIWYDREGNLvMTWP 63
                             568999**************************9998725776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0086264IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-1122100IPR002100Transcription factor, MADS-box
PROSITE profilePS500668.5212458IPR002100Transcription factor, MADS-box
PfamPF003191.1E-72458IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MTTTTKNKLS VRKDRVFKKP SSSSYKARAA TVLKKAFELS ELCGIDVCII WYDREGNLVM  60
TWPEKEEGKV KAMAERYSML SEQEKNKKSN NLSGFLNKKM IRDKKESLSK RDNKFFQQVS  120
ELEDSLQSRL QTLQESLLLD LSSNDSTLIN AYHHQASSLL NYPSSSTESR GDDVSTTTTT  180
TSMNHPQSKF SILLYNHDDG TFTQLANSSA LPSFEQQPQI PCDQDYGYLD LLLGEQGMRG  240
CNNFDLPTSS TILPSPPLMQ TQTPNFQQFM QTQQAYDQIP SFGPMLS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00089.1_g00022.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444867.10.0PREDICTED: agamous-like MADS-box protein AGL53
TrEMBLA0A3P6BZS01e-139A0A3P6BZS0_BRACM; Uncharacterized protein
TrEMBLM4CIN71e-139M4CIN7_BRARP; Uncharacterized protein
STRINGBra004071.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15639717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27070.14e-32AGAMOUS-like 53