PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_00087.1_g00115.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 326aa MW: 36584 Da PI: 6.1789 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 175.9 | 1.2e-54 | 20 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdee++++yLk+kv + ++++ +i +vd++k ePwdLpk +k +eke yfF++rd+ky+tg r+nrat sgyWkat Rsa1.0_00087.1_g00115.1 20 LPPGFRFHPTDEEIITHYLKEKVFNVQFTA-AAIGQVDLNKNEPWDLPKIAKMGEKEFYFFCQRDRKYPTGMRTNRATLSGYWKAT 104 79*************************999.78***************8888899******************************* PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gkdke+++ kg vg+kktLvfy+grapkgekt+Wvmheyrl Rsa1.0_00087.1_g00115.1 105 GKDKEIFRGKGCIVGMKKTLVFYRGRAPKGEKTNWVMHEYRL 146 ********99******************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-62 | 17 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.468 | 20 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-28 | 21 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 326 aa Download sequence Send to blast |
MLEEVGVVVN QGGDHEAVDL PPGFRFHPTD EEIITHYLKE KVFNVQFTAA AIGQVDLNKN 60 EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATLSGY WKATGKDKEI FRGKGCIVGM 120 KKTLVFYRGR APKGEKTNWV MHEYRLDGKY SYQNLPRSAR DEWVVCRVFH KNAPPINTTT 180 TTSNQLIGSE SLDNIDHLLD FSALPPLIDP GFLVQPGPSF SVAGQQNNLN PILHHSTTVA 240 INSTYFPAKT VNYTYHSDPN CGSGFGYGTG SGNNNNGIKF EHSLMSVSQE TGLSSDMNTT 300 TSPEICNEMS NDDDDLGIFW DDYKLI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-51 | 18 | 173 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-51 | 18 | 173 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-51 | 18 | 173 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-51 | 18 | 173 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
4dul_A | 9e-51 | 18 | 173 | 15 | 167 | NAC domain-containing protein 19 |
4dul_B | 9e-51 | 18 | 173 | 15 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_00087.1_g00115.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018489808.1 | 0.0 | PREDICTED: NAC domain-containing protein 92 | ||||
Swissprot | Q9SQQ6 | 0.0 | NAC46_ARATH; NAC domain-containing protein 46 | ||||
TrEMBL | M4ET20 | 0.0 | M4ET20_BRARP; Uncharacterized protein | ||||
STRING | Bra031950.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2269 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04060.1 | 1e-178 | NAC domain containing protein 46 |
Publications ? help Back to Top | |||
---|---|---|---|
|