PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00087.1_g00114.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 357aa MW: 40858.8 Da PI: 7.0274 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.6 | 4.3e-52 | 10 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdeel+ +yL+kkv++ +++l +vi++vdiyk++PwdLp k+ +ekewyfFs+rd+ky++g r+nra++sgyWkat Rsa1.0_00087.1_g00114.1 10 LPPGFRFHPTDEELILHYLRKKVSSLPVPL-SVIADVDIYKSDPWDLPDKAPFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKAT 94 79****************************.99***************888899******************************** PP NAM 87 gkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+dk + + +e++g+kk Lvfy+g+ pkg kt+W+mheyrl Rsa1.0_00087.1_g00114.1 95 GTDKLIAVPngegVHENIGVKKALVFYRGKPPKGIKTNWIMHEYRL 140 *******9955544455***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-61 | 7 | 186 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.819 | 10 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.0E-28 | 11 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MISKDPRSSL PPGFRFHPTD EELILHYLRK KVSSLPVPLS VIADVDIYKS DPWDLPDKAP 60 FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKLI AVPNGEGVHE NIGVKKALVF 120 YRGKPPKGIK TNWIMHEYRL TETLSPKRAG SCRSDRQAAN FEDRGLKSKE DSMRLDDWVL 180 CRIYKKSHTS LSSPDVASAT SNEEYAENDK ESVLISETLL PNLENNQTLK RQKSSFSNLL 240 DATDLTFLTN FLNETPENHT EPEFSFMFEN FSNPNIYGNP YLDQKLPRLS PPSSETSFIG 300 NKRERMDYAE ETTNTSKKMI NNFSYNNSID HLDHSMVQQS SFLNHELLMS PRLPYQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-70 | 9 | 190 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-70 | 9 | 190 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-70 | 9 | 190 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-70 | 9 | 190 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-70 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swm_B | 8e-70 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swm_C | 8e-70 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swm_D | 8e-70 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swp_A | 8e-70 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swp_B | 8e-70 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swp_C | 8e-70 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swp_D | 8e-70 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
4dul_A | 8e-70 | 9 | 190 | 16 | 169 | NAC domain-containing protein 19 |
4dul_B | 8e-70 | 9 | 190 | 16 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00087.1_g00114.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018490471.1 | 0.0 | PREDICTED: NAC transcription factor 25 | ||||
Swissprot | Q84TD6 | 0.0 | NAC47_ARATH; NAC transcription factor 47 | ||||
TrEMBL | V4M0Q7 | 0.0 | V4M0Q7_EUTSA; Uncharacterized protein | ||||
STRING | XP_006408226.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7723 | 25 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 0.0 | NAC domain containing protein 47 |
Publications ? help Back to Top | |||
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