PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00087.1_g00110.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 171aa    MW: 19799.2 Da    PI: 9.9554
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00087.1_g00110.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.96.5e-141462250
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                             ++e +  r +tfskR+ gi KK +E+  LC++e   ++fs++gk y+++
  Rsa1.0_00087.1_g00110.1 14 KVEAYADRMITFSKRKSGISKKINEIVSLCNVETIFLVFSESGKPYTFA 62
                             6788999****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.488565IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-15564IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-19676IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-14727IPR002100Transcription factor, MADS-box
PfamPF003194.9E-161561IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-142742IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-144263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MRLTKGKQKI EMKKVEAYAD RMITFSKRKS GISKKINEIV SLCNVETIFL VFSESGKPYT  60
FAYPSLKKAL GGFENPLSHE PFASINVGPL VEAYKRQKIQ VLMQRYVDLV KELEIQNEKE  120
KILKKSEKEN KEKMWWITPT EGLSVKEKMC RRQTFVDLHV SLSDMDGEGI F
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00087.1_g00110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018432847.11e-112PREDICTED: agamous-like MADS-box protein AGL23
TrEMBLA0A078HWS42e-75A0A078HWS4_BRANA; BnaC05g47460D protein
TrEMBLA0A0D3CMV92e-75A0A0D3CMV9_BRAOL; Uncharacterized protein
STRINGBo5g148390.13e-76(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.12e-49AGAMOUS-like 57