PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00087.1_g00089.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 412aa    MW: 45741.1 Da    PI: 6.0173
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00087.1_g00089.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.51.3e-32214268155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              k+r+rWtpeLHe+Fv+a++qLGGse+AtPk++l+l++ +gLt++hvkSHLQkYR+
  Rsa1.0_00087.1_g00089.1 214 KQRMRWTPELHEAFVDAINQLGGSERATPKAVLKLINSPGLTIYHVKSHLQKYRT 268
                              79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.862211271IPR017930Myb domain
SuperFamilySSF466898.6E-17212268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-30213270IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-23214268IPR006447Myb domain, plants
PfamPF002495.6E-10216267IPR001005SANT/Myb domain
PfamPF143792.4E-22308354IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MTLNGGFGFP TAMSSFFPLL PTTLDERYNH HKFPNSLWVS SSGPELMNNP VPCQVFPLVS  60
GGGSSSGYCN SVYVSANERS SSQTRQSVPH VSVETQSLPV TNQTQEQKDM SWPEDQLQGF  120
FDFPVPDPQA ESSSRAKTEW PDWANQMISV DDDGLEPNWS DLLGDPNVLN QDSKIPAPSC  180
EIARQEVVVV STHQHHQVDS SSAKSPQASS MTSKQRMRWT PELHEAFVDA INQLGGSERA  240
TPKAVLKLIN SPGLTIYHVK SHLQKYRTAR YKPELSVDTG TLIAFEKPPL KTLKTIEDIK  300
SIDLKTSIEI TEALRLQMEV QKKLHEQLEV QRTLQLQIEE QGRYLQMMIE KQQQKMQEKK  360
IGSSSGSSSM PEADNTSAPS TNLSQKLQSG SSSTLDQSGS FSGATKKRVR ED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-28214272260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-28214272260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-28214272260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-28214272260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-28214272260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-28214272260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-28214272260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-28214272260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00087.1_g00089.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1186302e-84AK118630.1 Arabidopsis thaliana At3g04450 mRNA for putative transfactor, complete cds, clone: RAFL19-89-P11.
GenBankBT0053522e-84BT005352.1 Arabidopsis thaliana At3g04445 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486012.10.0PREDICTED: myb family transcription factor PHL13 isoform X1
SwissprotF4J3P70.0PHLD_ARATH; Myb family transcription factor PHL13
TrEMBLM4FGG80.0M4FGG8_BRARP; Uncharacterized protein
STRINGBra040196.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04450.11e-145G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]