PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G04450.1 | ||||||||
Common Name | PHL13, T27C4.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | G2-like | ||||||||
Protein Properties | Length: 442aa MW: 49400.2 Da PI: 5.8803 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.6 | 2.5e-32 | 238 | 292 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fvea++qLGGse+AtPk++l+l++ +gLt++hvkSHLQkYR+ AT3G04450.1 238 KQRMRWTPELHEAFVEAINQLGGSERATPKAVLKLINSPGLTVYHVKSHLQKYRT 292 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.607 | 235 | 295 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.17E-17 | 236 | 292 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-29 | 237 | 294 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.1E-23 | 238 | 292 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.7E-10 | 240 | 291 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.2E-21 | 326 | 373 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MTLASDFGFP SAISSSFTIL EERYHNNFPN TLCVSSGQES MNNNPVPCQV FPLVSGGSSG 60 GNLFSSSSGF CNGVYVSSSS QARPSVSTVP RDRITVAHVS GEGQRQECPV ETHSLQLINQ 120 PQEQKIMTWS SDQIRGFFDF PVPDPQAASS RTMVSSKEVL SKCEWPDWAD QLISDDSLEP 180 NWSELLGDPN VLNLYSKIET QSSDIARQEI VFRNQHQVDP SMEPFNAKSP PASSMTSKQR 240 MRWTPELHEA FVEAINQLGG SERATPKAVL KLINSPGLTV YHVKSHLQKY RTARYKPELS 300 KDTEEPLVKN LKTIEDIKSL DLKTSIEITE ALRLQMKVQK QLHEQLEIQR SLQLQIEEQG 360 RYLQMMIEKQ QKMQENKKDS TSSSSMPEAD PSAPSPNLSQ PFLHKATNSE PSITQKLQNG 420 SSTMDQSEST SGTSNRKRVR ED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-28 | 238 | 296 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-28 | 238 | 296 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-28 | 238 | 296 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-28 | 238 | 296 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-28 | 238 | 296 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-28 | 238 | 296 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-28 | 238 | 296 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-28 | 238 | 296 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 258626_at | 0.0 | ||||
Expression Atlas | AT3G04450 | - | ||||
AtGenExpress | AT3G04450 | - | ||||
ATTED-II | AT3G04450 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G04450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G04450 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118630 | 0.0 | AK118630.1 Arabidopsis thaliana At3g04450 mRNA for putative transfactor, complete cds, clone: RAFL19-89-P11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001319469.1 | 0.0 | Homeodomain-like superfamily protein | ||||
Swissprot | F4J3P7 | 0.0 | PHLD_ARATH; Myb family transcription factor PHL13 | ||||
TrEMBL | A0A178VHS9 | 0.0 | A0A178VHS9_ARATH; Uncharacterized protein | ||||
STRING | AT3G04450.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM856 | 27 | 117 | Representative plant | OGRP78 | 17 | 262 |
Link Out ? help Back to Top | |
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Phytozome | AT3G04450.1 |
Entrez Gene | 819601 |
iHOP | AT3G04450 |
wikigenes | AT3G04450 |