PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00083.1_g00033.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 680aa    MW: 74405.7 Da    PI: 7.7283
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00083.1_g00033.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.66.9e-06286306526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              +C++f + G Ck Gd C +aHg
  Rsa1.0_00083.1_g00033.1 286 PCPDFKK-GSCKQGDMCEYAHG 306
                              8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002045.39E-1420151No hitNo description
Gene3DG3DSA:1.25.40.203.9E-1827174IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.02E-1571158IPR020683Ankyrin repeat-containing domain
SMARTSM002480.09673103IPR002110Ankyrin repeat
PfamPF127961.5E-973142IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.91873166IPR020683Ankyrin repeat-containing domain
SMARTSM002481.1E-4108140IPR002110Ankyrin repeat
PROSITE profilePS5008811.648108143IPR002110Ankyrin repeat
SMARTSM003561.2E-4281307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-4286308IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.915286308IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.362316340IPR000571Zinc finger, CCCH-type
SMARTSM00356110316339IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MCGLFKKLDT ENTLAKPMND AECEHSFSAL LEFAADNDVE GFKKHLSAAV PCIINQVGLW  60
YRRQRFARRM VVEQRTPLMV ASLYGSLDVV KLILSSPEAE LNLSCGPDKS TALHCAASGA  120
SVKALDVVKL LLSAGADPNL PDAHGNRPVD VLAVSPHSPG LRTILEEILM KDETISSSLG  180
SSFRSLSSSP DNGSSLLSLD SVSSPTKANG VVDGGFESEK KEYPIDPSLP DIKSGIYSTD  240
EFRMFSFKIR PCSRAYSHDW TECPFAHPGE NARRRDPRKF HYTCVPCPDF KKGSCKQGDM  300
CEYAHGVFEC WLHPAQYRTR LCKDGTGCNR RVCFFAHLKE ELRPLYASTG SGLPSPRASS  360
SAMDMASVLN MLPGSPSSAA QQHSFTPPIS PSGNGVMQPP HSSMGWPQQN IPALHLPGSN  420
VQLSRLRSSL NARDVQEFEM HMSSSPRFMN HSARPKNLEE HFSAAEVLSP RFSDQLAVSS  480
VLSPSHKSAL LNHLQSSNKQ QSMLSPIRTN LMSSPKNVEQ HSLLQSPRGM EPISPMNARM  540
KQQLHSRSLS SREFGSNLPR DVMQGGGGDS GSPLSPWSSW DQNHGNKVDW SVQSDELGRL  600
RKSHSLANNS NSNREADVTW VQQLVKETAS PRNSSSNLSM NMNGGARPLV QGGGSSGNIH  660
SDGRESDILD AWLDQLQLDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00083.1_g00033.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470498.10.0PREDICTED: zinc finger CCCH domain-containing protein 56
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLE4MVH50.0E4MVH5_EUTHA; mRNA, clone: RTFL01-01-B13
TrEMBLV4KTE70.0V4KTE7_EUTSA; Uncharacterized protein
STRINGXP_006399772.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain