PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00078.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 462aa    MW: 51278.1 Da    PI: 4.9128
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00078.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.89.7e-35201122103
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+y++++d+ ++e++sws+ ++sfvv++  efa+  LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F 
  Rsa1.0_00078.1_g00006.1  20 FLSKTYDMVDDPLTDEVVSWSSGNKSFVVWNVPEFARLFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFL 96 
                              9****************************************************************999.........********* PP

                              XXXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkkse 103
                              +g+k+ll++i r+k +
  Rsa1.0_00078.1_g00006.1  97 RGQKQLLKSIVRRKPS 112
                              ************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.4E-3715104IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.75E-3416109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.4E-5716109IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.3E-3020109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-192043IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-195870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-197183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MGSNCESVVA TTVVSSIPPF LSKTYDMVDD PLTDEVVSWS SGNKSFVVWN VPEFARLFLP  60
KYFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQK QLLKSIVRRK PSQVQPPQQP  120
QVQHSSVGAC VEVGRFGLEG EVERLQRDKN VLTQELVRLR QQQQVTEHHL QNVGQKVHVM  180
EQRQQQMMSF LAKAVQSPGF LNQFSQQTNE ENQHISESNK KRRLPAEEDH KYSGSYGANG  240
LSRQIVRYQS SMNEAADTML EQIHNMRNPH SSQEPLSSNH DGSFLLSDVP NISDNGSSTN  300
GASGVTLADV SSNPAMTYHV PCEANQILEG NLPYSQVDLL APNQGGAAAA YGSSSSDVVG  360
CETDTGECLD PIMAVLAGSM ALESNAVNEL LPGVQDPLWE QFFGERPVIG DTEELVSGSV  420
DNGLLMEQLE LQSNLRNVLS NNQQMNHLTE QMGFLSSDAL RK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-251510915120Heat shock factor protein 1
5d5u_B6e-251510924129Heat shock factor protein 1
5d5v_B6e-251510924129Heat shock factor protein 1
5d5v_D6e-251510924129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00328DAPTransfer from AT3G02990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00078.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490617.10.0PREDICTED: heat stress transcription factor A-1e-like
SwissprotQ9SCW50.0HFA1E_ARATH; Heat stress transcription factor A-1e
TrEMBLA0A3N6RIX20.0A0A3N6RIX2_BRACR; Uncharacterized protein
STRINGBra032023.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.10.0heat shock transcription factor A1E
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]