PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00067.1_g00063.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 416aa    MW: 47300.4 Da    PI: 6.3621
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00067.1_g00063.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.28.4e-27103197185
                 trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsess 76 
                              +Wt+++v++Li+a+++++++++ +          +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++
  Rsa1.0_00067.1_g00063.1 103 KWTDKMVKLLITAVSYIGDDSSMDGgsrrkfaalQKKGKWKSVSKVMSERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVV 188
                              7**************8888887543345556677**********************************************669999 PP

                 trihelix  77 stcpyfdql 85 
                              ++ +++d++
  Rsa1.0_00067.1_g00063.1 189 ENPALLDSI 197
                              998888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-24101224No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MDGSFPQGGV VRGGASSYGG GGFDLQGSMR VHQQQHNSQP LHEGLPFTMV TAQTCDHHHH  60
NVPMTTEQQH NKNSVSDDDE PSFNEEGGGG EKSTKGSPWQ RVKWTDKMVK LLITAVSYIG  120
DDSSMDGGSR RKFAALQKKG KWKSVSKVMS ERGYHVSPQQ CEDKFNDLNK RYKKLNDMLG  180
RGTSCQVVEN PALLDSIGYL NDKEKDDVRK IMSSKHLFYE EMCSYHNGNR LHLPHDLALQ  240
RSLKLALRNR DDHESHHQVE DLDEDDGEGE EGDEYDDFSH GGCRGVHHGG GGGALKKARQ  300
SHSHEDVDHP GQNVSSLECN KLSLAQMPFP QGGEESERAA LTQKQWIESR TLQLEEQKLQ  360
IQVELLELEK QRFRWERFSK KRDQELERMR VENERMKLEN DRMGLELKQR ELGVEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00067.1_g00063.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0458501e-161AY045850.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBankAY0913781e-161AY091378.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBankCP0026841e-161CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF16F41e-161AC036104.3 Sequence of BAC F16F4 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468461.10.0PREDICTED: uncharacterized protein LOC108840101
RefseqXP_018468531.10.0PREDICTED: uncharacterized protein LOC108840101
TrEMBLA0A397YZY60.0A0A397YZY6_BRACM; Uncharacterized protein
TrEMBLM4EAS20.0M4EAS2_BRARP; Uncharacterized protein
STRINGBra025881.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50422752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.10.0sequence-specific DNA binding transcription factors