PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00064.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 325aa    MW: 37261.2 Da    PI: 7.4237
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00064.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.5e-12159210155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +r++h  +Er+RR+++N  ++ Lr+l+P++   +  + + a+i+  A++++k+L+
  Rsa1.0_00064.1_g00010.1 159 QRMTHITVERNRRRQMNVYLNSLRSLIPSS---YILRGDQASIVGGAIDFVKNLE 210
                              79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-15151219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12157214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-10157214No hitNo description
PROSITE profilePS5088814.329158209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9159210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-9164215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEKIQGQNKL CSLNQKVIVR RSLEVQGSGE DQRFELEEED QFLQKMQQSE DLSAAVLPFK  60
DPNFLALLSL QTLEKPPWGL GNYLPHEVPE LSHSPNYYNY QNPSLERINE AMISTQEEIQ  120
LNPQRKRGNN NSVASSVSRE KRKRKRTKPA KNTEEMESQR MTHITVERNR RRQMNVYLNS  180
LRSLIPSSYI LRGDQASIVG GAIDFVKNLE QQLQSLEAQK ITEQTDTKDV SLRTCDEEQN  240
STKLRIDATV IESHVNLKIQ CPKKQGQLLR SIIWLEKLRL TVLHLNVTSP CNASVSYSFN  300
LKMEDECVLG SADEITAAVR QIFDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124145RKRGNNNSVASSVSREKRKRKR
2141148RKRKRTKP
3159170RMTHITVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00064.1_g00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439014.10.0PREDICTED: transcription factor bHLH70
SwissprotO810371e-134BH070_ARATH; Transcription factor bHLH70
TrEMBLA0A078HV321e-173A0A078HV32_BRANA; BnaC04g00610D protein
TrEMBLA0A0D3BNQ41e-173A0A0D3BNQ4_BRAOL; Uncharacterized protein
STRINGBo4g006950.11e-174(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-134bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]