PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00062.1_g00025.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 378aa MW: 42477.6 Da PI: 8.4511 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 7.6e-18 | 47 | 91 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT eE+e++v+a k++G W++I +++g ++t+ q++s+ qk+ Rsa1.0_00062.1_g00025.1 47 RERWTDEEHEKFVEALKLYGRA-WRKIQEHVG-TKTAVQIRSHAQKF 91 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.22E-17 | 41 | 96 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.1 | 42 | 96 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 4.0E-16 | 45 | 94 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.8E-14 | 46 | 94 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 47 | 90 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-10 | 47 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.50E-11 | 49 | 92 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MTLTANVKGA NRVEEDTEDK QQIQKLSDQV FDYAPKVRKP YTITKERERW TDEEHEKFVE 60 ALKLYGRAWR KIQEHVGTKT AVQIRSHAQK FFSKVAREAS GGNGNSLEPV VIPPPRPKRK 120 PMHPYPRKLG NEGDQTRRSV SPSERDNRSP TSVLSLSTTG SEAMGSSDSY SHNRSLSPVS 180 SASPQAAQAT TAPEELEPLK LELFPSERLF KRESSIKEPT KQSLKLFGKT VLVSDLDMSS 240 SLTTSTTYCK LPIQPLPRKL SMVTIPQEEL LSCWIQVPPK KEELENRCLD SEKGVQNEGS 300 STGSNTGSLD DTGHTEKSSE PETMVCQREF KPSERSAFSE LRRANSESNS RGFGPYKKRK 360 MGTEAEEEQD QQEIRLCL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00515 | DAP | Transfer from AT5G17300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00062.1_g00025.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269|PubMed:19805390, ECO:0000269|PubMed:23240770}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353109 | 0.0 | AK353109.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-B24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018468626.1 | 0.0 | PREDICTED: protein REVEILLE 1-like | ||||
Swissprot | F4KGY6 | 0.0 | RVE1_ARATH; Protein REVEILLE 1 | ||||
TrEMBL | A0A398AE37 | 0.0 | A0A398AE37_BRACM; Uncharacterized protein | ||||
STRING | Bra023610.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6356 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 1e-145 | MYB_related family protein |
Publications ? help Back to Top | |||
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