PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00061.1_g00026.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 600aa    MW: 68004.2 Da    PI: 6.7193
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00061.1_g00026.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM478.3e-15121369128
                      NAM   9 PtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkya...t.gkrknr.atksgyWkat 86 
                              Pt+ +l+ + L+ ++e++k +   +i+++ ++y+ ePw ++  ++v+ +e+ w++F++r+++     t +k ++r ++ sg+Wk+t
  Rsa1.0_00061.1_g00026.1  12 PTNIDLI-NILRCRIEQDKRPS--FITDMhNLYEKEPWLIQhvRHVSFDENLWFYFVTRKQRPGikkTgSKTPSRkVVGSGRWKTT 94 
                              8999999.77999999988777..5777779*********943366668899999999988654443313355665899******* PP

                      NAM  87 gkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              g  +e ++  g  v   kt+ f   +++ ++g  t Wvmhe+ l
  Rsa1.0_00061.1_g00026.1  95 GVLTENKD--GVRVCSVKTISFKadSETVKDGITTGWVMHEFVL 136
                              *9877665..8889999*****95545778999*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.6594152IPR003441NAC domain
SuperFamilySSF1019414.97E-1712151IPR003441NAC domain
PfamPF023655.0E-812136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MNVTRCSQTR GPTNIDLINI LRCRIEQDKR PSFITDMHNL YEKEPWLIQH VRHVSFDENL  60
WFYFVTRKQR PGIKKTGSKT PSRKVVGSGR WKTTGVLTEN KDGVRVCSVK TISFKADSET  120
VKDGITTGWV MHEFVLDKPG FQELALCRIR FYPRKDNAQY APRLAPIVMG LERGDGSKLV  180
EKNSQNHMTS IHHGVAATVE THQDQGMEQW SGSCSGEAVS SLALQHQKIM GQDSDYPIFN  240
GGMKKHQDFR SYGQQKTPIL GHMEQYGQGS ADRVEYQNQY LGQEKTDPKK VRMMVNLALN  300
EYSGHLPSQH QHFTLNGSKE QHQSLSSCGG LLGESSGQQQ HHSLGRQATY LSLMDSAQAM  360
EEQQQGNDYS ALYSSEPSVQ CMIDRQIFAS SALRMAQKTE YLREKNDLLA LRDLDAQQKH  420
LSQESNLPLT QHQNKILGQA THNVPCWAQP YDQYKGQNNE LPAVPMETHQ QQNNELPVVP  480
IKAQQQHNNE LTTVPMKTEQ QQNNEIPTVP LKSRQQQDSF VRNSAAQLHP EAQDGVPSID  540
QTMEALATDP PIDSQKHQEL LGDDFFQGMD TEMADLSDDF CVGDLAQQFK KLPIPYSMFY
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00061.1_g00026.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896210.0AC189621.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH121P05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3N6PKP10.0A0A3N6PKP1_BRACR; Uncharacterized protein
STRINGBra036314.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144241018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.12e-10NAC domain containing protein 88