PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00061.1_g00015.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 517aa    MW: 58201.2 Da    PI: 4.6203
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00061.1_g00015.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM561.4e-17410139128
                      NAM  39 iykvePwdLp..kkvkaeekewyfFskrdkkya...tgkrknr.atksgyWkatgkdkevlskkgelvglkktLvfykg..rapkg 116
                              +y+ ePw L+  ++v+ +++ew++F++r+k+      +kr++r +++sg+Wk+tg   +v++++g  vg++k + f     + ++g
  Rsa1.0_00061.1_g00015.1   4 LYEREPWLLQhvRHVTFKDNEWFYFVRRNKRPGmtaDSKRPSRkVAESGMWKTTGMVIQVKNQDGVIVGCRKNISFKADcdTVKDG 89 
                              7999*****95336677999*******99986544467899997899******************************543378999 PP

                      NAM 117 ektdWvmheyrl 128
                                t W+mhe+ l
  Rsa1.0_00061.1_g00015.1  90 ITTGWTMHEFIL 101
                              **********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.8621117IPR003441NAC domain
SuperFamilySSF1019411.09E-204116IPR003441NAC domain
PfamPF023651.1E-722100IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MQSLYEREPW LLQHVRHVTF KDNEWFYFVR RNKRPGMTAD SKRPSRKVAE SGMWKTTGMV  60
IQVKNQDGVI VGCRKNISFK ADCDTVKDGI TTGWTMHEFI LDRPWFQEVV LCRIRFFKRK  120
DNAQYAPRFL PIVIGRERGD SPVETHQDQG MEQWTGSCSR EVASYLASQQ IRAQDLNYPM  180
LNGGRMQHQD FGFYGQLKQN GQGLGQETTD SRQVPMIMNQ TFDEGQQWNG YSGSSSANQD  240
MVPVTQDLMA AQGQQLSVNG SMEQHQDSGS YGQVSGEFLG QQQNHIRGGQ ASSVSLMGDH  300
QQQCQNLFGG HGTDPSHSAQ AMEQQQERNG YFGQYSAQPY DQGTMENQDF GSSALGFVQK  360
NDLSAPIELA SQQQDLGENS NLSLTQQQNQ TVPTKTQQLQ RGSVTINSAE QLHTEAQNSV  420
PLINQTMEAQ ATDLPVNQGV DESHGGIVGS PTFSELYQKL LGEEEMDSEM DNIRNDFLNE  480
EWVQKLGKNT PDEEAELMAD FTNCETFESF LDSLLSK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00061.1_g00015.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896211e-139AC189621.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH121P05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111333.10.0PREDICTED: uncharacterized protein LOC103836792
TrEMBLA0A078G6E50.0A0A078G6E5_BRANA; BnaA09g00440D protein
STRINGBra036304.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144241018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.17e-13NAC domain containing protein 88