PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00059.1_g00026.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 130aa    MW: 14311 Da    PI: 8.4805
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00059.1_g00026.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.37e-171161155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             s+ykG+r++k +g+Wv+eIr+p +   r r +lg+f tae+Aa a++ a  +l++
  Rsa1.0_00059.1_g00026.1 11 SKYKGIRRRK-WGKWVSEIRVPGT---RDRLWLGSFSTAEGAAVAHDVAFYCLHQ 61
                             89*****998.**********943...5*********************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-171172IPR016177DNA-binding domain
PfamPF008471.2E-81159IPR001471AP2/ERF domain
CDDcd000183.00E-271173No hitNo description
Gene3DG3DSA:3.30.730.103.0E-251272IPR001471AP2/ERF domain
PROSITE profilePS5103221.3511271IPR001471AP2/ERF domain
SMARTSM003801.2E-311277IPR001471AP2/ERF domain
PRINTSPR003675.9E-91324IPR001471AP2/ERF domain
PRINTSPR003675.9E-93551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MDYRDTIETQ SKYKGIRRRK WGKWVSEIRV PGTRDRLWLG SFSTAEGAAV AHDVAFYCLH  60
QPNSLESLNF PHLLPPSIAS KTSPRSIQQA ASNAGMAVDA GIVNSDHRTS GDGGALNISV  120
YDYLDGHNHV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00059.1_g00026.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553401e-122AC155340.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH020D15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441938.14e-94PREDICTED: ethylene-responsive transcription factor ERF019
SwissprotO805426e-73ERF19_ARATH; Ethylene-responsive transcription factor ERF019
TrEMBLA0A3N6RMI88e-80A0A3N6RMI8_BRACR; Uncharacterized protein
STRINGBo5g038890.15e-80(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.12e-75ERF family protein
Publications ? help Back to Top
  1. Scarpeci TE,Frea VS,Zanor MI,Valle EM
    Overexpression of AtERF019 delays plant growth and senescence, and improves drought tolerance in Arabidopsis.
    J. Exp. Bot., 2017. 68(3): p. 673-685
    [PMID:28204526]