PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00047.1_g00004.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 498aa MW: 57140.8 Da PI: 5.4662

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00047.1_g00004.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178	2.6e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrFhPtdeel+++yLk+k++g+++el e+i+evd+yk+ePwdLp k + ++++ewyfFs+rd+ky++g+r+nratk gyWk Rsa1.0_00047.1_g00004.1 6 LPPGFRFHPTDEELITYYLKRKINGREIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDQEWYFFSPRDRKYPNGSRTNRATKGGYWK 90 79**************************.99***********6345667999************************ PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atgkd++v +++++g+kktLv+y+grap+g +t Wvmheyrl Rsa1.0_00047.1_g00004.1 91 ATGKDRRVSL-RDRAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 133 ******.8899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-63	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	61.295	6	157	IPR003441	NAC domain
Pfam	PF02365	3.3E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0090602	Biological Process	sieve element enucleation
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSL RDRAIGTKKT LVYYRGRAPH 120 GIRTGWVMHE YRLDETECEP TAFGMQDAYA LCRVFKKIII EAKPRDQQQQ QHQPYAHTSS 180 NISRSSSFDV GSDLEISSNT HQVPPYSNAA ETQPPFGNAN TVGNHDEWLQ YLSHDMPLRF 240 SNYGSPYGPY LNPSKVYTET DCGMLQHQMS LQPLQVENSV VQTSIFSNGM NQNGGQCGFS 300 DFTFAASNPN HLYNNTVDDH LIHNGNLDEQ LLSVGNSTWM NMSNENLKQS FIEDTEILPS 360 FEENDQDLEY YGGSRTNTID NIEIDEFFSF EDRIENTDKS NITLNSSGSE MIEEEIRVDH 420 KMLVCTRQTP KVLYHQVVPS QILKIHINLI GGNEEGRLFM EEEGKDSWFQ TAENVGKMKL 480 KQIGLVAKHY YKCLTIIF

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELI TYYLKRKING REIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DQEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRRVSL RDRAIGTKKT LVYYRGRAPH  120
GIRTGWVMHE YRLDETECEP TAFGMQDAYA LCRVFKKIII EAKPRDQQQQ QHQPYAHTSS  180
NISRSSSFDV GSDLEISSNT HQVPPYSNAA ETQPPFGNAN TVGNHDEWLQ YLSHDMPLRF  240
SNYGSPYGPY LNPSKVYTET DCGMLQHQMS LQPLQVENSV VQTSIFSNGM NQNGGQCGFS  300
DFTFAASNPN HLYNNTVDDH LIHNGNLDEQ LLSVGNSTWM NMSNENLKQS FIEDTEILPS  360
FEENDQDLEY YGGSRTNTID NIEIDEFFSF EDRIENTDKS NITLNSSGSE MIEEEIRVDH  420
KMLVCTRQTP KVLYHQVVPS QILKIHINLI GGNEEGRLFM EEEGKDSWFQ TAENVGKMKL  480
KQIGLVAKHY YKCLTIIF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-54	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-54	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-54	1	157	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-54	1	157	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	3e-54	1	157	15	168	NAC domain-containing protein 19
3swm_B	3e-54	1	157	15	168	NAC domain-containing protein 19
3swm_C	3e-54	1	157	15	168	NAC domain-containing protein 19
3swm_D	3e-54	1	157	15	168	NAC domain-containing protein 19
3swp_A	3e-54	1	157	15	168	NAC domain-containing protein 19
3swp_B	3e-54	1	157	15	168	NAC domain-containing protein 19
3swp_C	3e-54	1	157	15	168	NAC domain-containing protein 19
3swp_D	3e-54	1	157	15	168	NAC domain-containing protein 19
4dul_A	3e-54	1	157	12	165	NAC domain-containing protein 19
4dul_B	3e-54	1	157	12	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00047.1_g00004.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018446024.1	0.0	PREDICTED: NAC domain-containing protein 86 isoform X2
Swissprot	Q9FFI5	0.0	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A0D3EEU3	0.0	A0A0D3EEU3_BRAOL; Uncharacterized protein
STRING	Bo9g161440.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4411	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	0.0	NAC domain containing protein 86

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]