PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00044.1_g00052.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 218aa MW: 24741.7 Da PI: 9.0982

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00044.1_g00052.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	54.5	1.5e-17	10	50	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ien+ r+ tf kR+ gi+KKA ELS+LCd+ vav + s+ Rsa1.0_00044.1_g00052.1 10 YIENDNSRKATFRKRKGGIMKKALELSTLCDVPVAVFVQSE 50 59**********************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.6E-20	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	19.217	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.19E-21	2	86	No hit	No description
PRINTS	PR00404	4.8E-12	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.24E-22	3	96	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-16	11	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.8E-12	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.8E-12	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MARNRVRMAY IENDNSRKAT FRKRKGGIMK KALELSTLCD VPVAVFVQSE YKPVPEVFPA 60 SREAMGNVLA KWDMLSLVDK TKRMVNQEKF LQQRIDKATE GIKKVDKENK ELAMKEVMFD 120 CLSEKTAPCF LVKDDLPELA GVIDHYIKRL NRRMQILTMN DASSSSSVIP PAVATAVAMP 180 RAEMGFYSTG FNGMIQENMN VMTNVKDFDL NQAQDEYP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00044.1_g00052.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018479318.1	1e-160	PREDICTED: agamous-like MADS-box protein AGL80
TrEMBL	A0A0D3DCK8	4e-99	A0A0D3DCK8_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6EH82	4e-99	A0A3P6EH82_BRAOL; Uncharacterized protein
STRING	Bo7g095090.1	1e-100	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26630.1	5e-54	M-type_MADS family protein