PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00044.1_g00049.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 364aa MW: 42013.3 Da PI: 5.7745 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.8 | 1.6e-14 | 11 | 52 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i +k+ r +tf kR++g +KK +EL +LC+++++ +++s ++ Rsa1.0_00044.1_g00049.1 11 IPDKTSRRTTFKKRKAGFMKKLNELVTLCGVKACAVVYSDQN 52 7899***********************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.694 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.5E-16 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.46E-28 | 3 | 84 | No hit | No description |
PRINTS | PR00404 | 5.0E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-20 | 3 | 96 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-15 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-8 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MVRSRVKLSL IPDKTSRRTT FKKRKAGFMK KLNELVTLCG VKACAVVYSD QNDANPEAWP 60 SRAEAGEVIS KFMEFPEVER DKKMYDQKRY TLERISKEQA TLQRLQEENR EFELKEIMFN 120 LIKGKRMMQH HSNDASFLYD LTKFIDFNVS ELTKRIHLLQ ANGEPISFLP LDDGDVDAAH 180 PAVGDVNPIA GADVAAVRMP YGFNFDHIQN MNMNVNQQAP AYHIPYQNMN QQELFRNQVP 240 TNFSGHVQYP NMMNYPEQFQ YQVPNNVYDH NKHGFYGLNQ GMGLDLDPNL SESFNQYPNL 300 HDQPCMNQWM AQPQQTSYAE DLATLASMDD DYNNYHQLPS TSYMPPMDLP ALNTNNLPTR 360 FGLD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00044.1_g00049.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018482569.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL86 | ||||
TrEMBL | M4D0B3 | 0.0 | M4D0B3_BRARP; Uncharacterized protein | ||||
STRING | Bra009911.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26650.1 | 6e-48 | AGAMOUS-like 36 |