PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00041.1_g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 342aa MW: 38002.5 Da PI: 6.2855 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.2 | 3.8e-54 | 20 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdee++++yLk+kv + +++ +i ++d++k ePwdLpk +k +eke yfF++rd+ky+tg r+nrat sgyWkat Rsa1.0_00041.1_g00016.1 20 LPPGFRFHPTDEEIITHYLKEKVFNIRFTS-AAIGQADLNKNEPWDLPKIAKMGEKEFYFFCQRDRKYPTGMRTNRATVSGYWKAT 104 79*************************998.78***************8888899******************************* PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gkdke+l+ kg lvg+kktLvfy+grapkgekt+Wvmheyrl Rsa1.0_00041.1_g00016.1 105 GKDKEILRGKGCLVGMKKTLVFYRGRAPKGEKTNWVMHEYRL 146 ********9*******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.36E-61 | 17 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.946 | 20 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.4E-29 | 21 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:1900057 | Biological Process | positive regulation of leaf senescence | ||||
GO:1903648 | Biological Process | positive regulation of chlorophyll catabolic process | ||||
GO:0000975 | Molecular Function | regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MVDEGGVVVN QGGDQEVVDL PPGFRFHPTD EEIITHYLKE KVFNIRFTSA AIGQADLNKN 60 EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATVSGY WKATGKDKEI LRGKGCLVGM 120 KKTLVFYRGR APKGEKTNWV MHEYRLDGIY SYHNLPKSAR DEWVVCRVFH KNAPPPTTIA 180 TPTNQLTRID SLDNIDHLLD FSSLPPLIDP GFLSQPGPSF SGAGQQHDFK PIPHHPTTVQ 240 INNTYPSAQT LNYPYHSVPT YGFGSGSGTS LGNNNNGMIK LEHSLVSVSQ DTGLSSDVNT 300 TATPEISSSY PVMGNIAANA AMVDGNNTSY DDDDLGIFWD DY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-50 | 18 | 173 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-50 | 18 | 173 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-50 | 18 | 173 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-50 | 18 | 173 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swm_B | 2e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swm_C | 2e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swm_D | 2e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swp_A | 2e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swp_B | 2e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swp_C | 2e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swp_D | 2e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
4dul_A | 2e-50 | 18 | 173 | 15 | 167 | NAC domain-containing protein 19 |
4dul_B | 2e-50 | 18 | 173 | 15 | 167 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00332 | DAP | Transfer from AT3G04060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00041.1_g00016.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018438968.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like | ||||
Swissprot | Q9SQQ6 | 0.0 | NAC46_ARATH; NAC domain-containing protein 46 | ||||
TrEMBL | A0A3P5ZRA0 | 0.0 | A0A3P5ZRA0_BRACM; Uncharacterized protein | ||||
STRING | Bo1g152230.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2269 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04060.1 | 0.0 | NAC domain containing protein 46 |
Publications ? help Back to Top | |||
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