PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00041.1_g00015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 356aa MW: 40776.8 Da PI: 7.8682 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.7 | 2e-52 | 10 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdeel+ +yL+kkv++++++l ++i++vdiyk++PwdLp+k+ +ekewyfFs+rd+ky++g r+nra++sgyWkat Rsa1.0_00041.1_g00015.1 10 LPPGFRFHPTDEELILHYLRKKVSSSPVPL-SIIADVDIYKSDPWDLPAKAPFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKAT 94 79****************************.89***************988899******************************** PP NAM 87 gkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+dk + + +e++g+kk Lvfy+g+ pkg+kt+W+mheyrl Rsa1.0_00041.1_g00015.1 95 GTDKLIAVPnregFNENIGIKKALVFYTGKPPKGVKTNWIMHEYRL 140 ******99855554556***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-61 | 8 | 186 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.837 | 10 | 186 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-28 | 11 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MIRKDPRSSL PPGFRFHPTD EELILHYLRK KVSSSPVPLS IIADVDIYKS DPWDLPAKAP 60 FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKLI AVPNREGFNE NIGIKKALVF 120 YTGKPPKGVK TNWIMHEYRL AESITPKRVT HARNGGQVNN LGDLNLKSKE YSMRLDDWVL 180 CRIYKKSHAS LSSAEVASAT SDDQEHEENG NEPFVVSEPL LPNDQTLKRQ KSSFSNLLDA 240 TDFTFLTNFL NETPENRTES DFSLMFGDFA NPDIYGNRYL DHKLPKLSSP TSETRVIGNK 300 RERLDYSEEM INTSKKMINN FSYNNSMDHL DHSMVQQSSF LNQEFLMSPP HLHYQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-71 | 9 | 190 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-71 | 9 | 190 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-71 | 9 | 190 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-71 | 9 | 190 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-71 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swm_B | 8e-71 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swm_C | 8e-71 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swm_D | 8e-71 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swp_A | 8e-71 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swp_B | 8e-71 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swp_C | 8e-71 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
3swp_D | 8e-71 | 9 | 190 | 19 | 172 | NAC domain-containing protein 19 |
4dul_A | 8e-71 | 9 | 190 | 16 | 169 | NAC domain-containing protein 19 |
4dul_B | 8e-71 | 9 | 190 | 16 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00333 | DAP | Transfer from AT3G04070 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00041.1_g00015.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF974760 | 0.0 | KF974760.1 Brassica napus NAC transcription factor 47-1 (NAC47-1.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018434651.1 | 0.0 | PREDICTED: NAC domain-containing protein 2-like | ||||
Swissprot | Q84TD6 | 0.0 | NAC47_ARATH; NAC transcription factor 47 | ||||
TrEMBL | A0A0C4MXK5 | 0.0 | A0A0C4MXK5_BRANA; NAC47-1.1 protein | ||||
TrEMBL | A0A398ATY5 | 0.0 | A0A398ATY5_BRACM; Uncharacterized protein | ||||
STRING | Bra040152.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7723 | 25 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 0.0 | NAC domain containing protein 47 |
Publications ? help Back to Top | |||
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