PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00041.1_g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 187aa MW: 21204.8 Da PI: 5.7875 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.1 | 6.1e-15 | 15 | 62 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +e++ r +tfskR++gi KK +E+ Cd+e+a+++fs+ gk +++ Rsa1.0_00041.1_g00013.1 15 VEDYEDRMTTFSKRKAGISKKLNEIVAQCDVEAALLVFSQAGKPHTFT 62 79999*****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.166 | 5 | 65 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-17 | 5 | 64 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.63E-20 | 6 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-12 | 7 | 27 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.4E-17 | 15 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-12 | 27 | 42 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-12 | 42 | 63 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MKNTKGKQKI EMREVEDYED RMTTFSKRKA GISKKLNEIV AQCDVEAALL VFSQAGKPHT 60 FTHPSMEVAV GRVKSHLRNE LSGKDDTNTA GSLVEAYKRQ KNEELKKCFV DLAKELEMEE 120 EKEKQLRESK SEKKLEEKWW NDEGSSVEEL KQMHQNFVEL NVSLCGSASQ EKDGDGSSSD 180 LAGRGYP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00041.1_g00013.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018435277.1 | 1e-121 | PREDICTED: agamous-like MADS-box protein AGL23 | ||||
TrEMBL | A0A078JXZ9 | 2e-77 | A0A078JXZ9_BRANA; BnaCnng72100D protein | ||||
TrEMBL | A0A0D3AFP2 | 2e-77 | A0A0D3AFP2_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6G7J2 | 2e-77 | A0A3P6G7J2_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g152200.1 | 3e-78 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 1e-44 | AGAMOUS-like 57 |